FC872848
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAA (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=glyA PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28 Identity = 64/140 (45.71%), Postives = 89/140 (63.57%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441 DF ++N +VFP QGGP H + AVA +A P F+ YA Q++ NA AL L +G +LV+GGT+NHL+L DLR GLTG + ++ D ITVNKNA+ D + G+RIGTPA+T+RG+ E + QI ++ Sbjct: 242 DFAKQLNSSVFPGTQGGPLMHVIAGKAVAFGEALRPEFRQYAAQIRRNARALAEGLMAQGLTLVSGGTDNHLMLVDLRSTGLTGAQAQRALDKAAITVNKNAIPDDPQPPMKTSGIRIGTPAVTTRGMREPEMAQIAAWI 381
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA2_VIBCH (Serine hydroxymethyltransferase 2 OS=Vibrio cholerae GN=glyA2 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28 Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441 + KIN AVFP LQGGP H + A AVA +A P F+ Y V NA L L +G +VTGGT+ HL+L DLRP GL GN+VE+ + IT NKN + F + + G+R+GTPA TSRG ++F+ IGE++ Sbjct: 260 EIHKKINSAVFPGLQGGPLMHVIAAKAVAFGEALGPEFRTYIDSVIDNAKVLAEVLQTRGCDIVTGGTDTHLMLVDLRPKGLKGNQVEQALERAGITCNKNGIPFDEEKPMITSGIRLGTPAGTSRGFGREEFKLIGEWI 399
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA2_RHIME (Serine hydroxymethyltransferase 2 OS=Rhizobium meliloti GN=glyA2 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28 Identity = 63/140 (45.00%), Postives = 87/140 (62.14%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441 D K+N AVFP LQGGP H + A AVAL +A F+ YA+Q+ ANA AL + LT +GY +V+GGT+ HL+L DLR G++G E+ +T NKN + F + G+R+GTPA TSRG E +F ++G + Sbjct: 246 DVAKKVNSAVFPGLQGGPLMHVIAAKAVALGEALEDNFRQYARQMVANARALASALTERGYDIVSGGTDTHLILVDLRSKGVSGKDAEEALGRAGLTCNKNGIPFDPAPPAVTSGIRLGTPAATSRGFREAEFNEVGALI 385
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_ORITI (Serine hydroxymethyltransferase OS=Orientia tsutsugamushi (strain Ikeda) GN=glyA PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27 Identity = 61/136 (44.85%), Postives = 84/136 (61.76%), Query Frame = 1 Query: 37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441 KIN AVFP +QGGP H + A A+A +A P +K Y QV NA L L +GY+++TGGT+NH++L DLR +TG + E L D IT NK + F +S G+R+GTPA T+RG E DF +G+++ Sbjct: 240 KINSAVFPGMQGGPLMHVIAAKAIAFSEALMPQYKEYINQVMLNAKVLAKLLQDRGYNILTGGTDNHMLLVDLRGKNITGQEAEYLLDAAGITCNKQVMPFDTTSPTITSGIRLGTPACTTRGFKENDFITVGKYI 375
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BEII9 (Serine hydroxymethyltransferase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=glyA PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27 Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441 D KIN AVFP LQGGP H + A AVA +A P F+ YA+QV NA L + L KG+++ +GGT+NHL+L DLRP LTG E +IT NKN V F +S G+R+G+PA TSRG K+F+ + + + Sbjct: 258 DIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALRPDFRLYAQQVVVNAGTLASRLVEKGFAISSGGTDNHLMLVDLRPKQLTGKAAEAALGRASITCNKNGVPFDTASPFVTSGIRLGSPAATSRGFGTKEFQDVADLI 397
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_ALKMQ (Serine hydroxymethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glyA PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27 Identity = 65/131 (49.62%), Postives = 86/131 (65.65%), Query Frame = 1 Query: 40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 429 I+ A+FP LQGGP H + A AVA K+A P FKAY +QV NA ALG L +G+ LV+ GT+ HL+L DLR +TG E+L D ITVNKN + F S G+RIGTPA+T+RG+ E++ ++I Sbjct: 248 IDKAIFPGLQGGPLMHVIAAKAVAFKEALEPGFKAYQEQVIKNAKALGEELKKQGFDLVSDGTDTHLLLIDLRNKNITGKDAERLFDEVGITVNKNTIPFDPQSPFVTSGIRIGTPAVTTRGMKEEEMKKI 378
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA2_VIBPA (Serine hydroxymethyltransferase 2 OS=Vibrio parahaemolyticus GN=glyA2 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27 Identity = 76/192 (39.58%), Postives = 101/192 (52.60%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEAL-----KADVEKFASSFDM 582 D KIN AVFP LQGGP H + A AVA +A P FK Y V NA L L +G +VTGGT+ HL+L DLRP GL GNK E+ + IT NKN + F + G+R+GTPA TSRG ++F+ IG + + D GLVNN + +A+ + +V++ S F + Sbjct: 256 DIIKKINSAVFPGLQGGPLMHVIAAKAVAFGEALGPEFKTYIDSVINNAKVLAEVLQTRGCDIVTGGTDTHLMLVDLRPKGLKGNKAEEALERAGITCNKNGIPFDTEKPMITSGIRLGTPAGTSRGFGAEEFKLIGNW------------------IGDVLDGLVNNPEGDAIVEKRVRKEVKELCSRFPL 429
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_PERMH (Serine hydroxymethyltransferase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=glyA PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27 Identity = 73/178 (41.01%), Postives = 99/178 (55.62%), Query Frame = 1 Query: 52 VFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 582 VFP LQGGP H + A AVA K+A T F+ YA Q NA L L +G +V+GGT++H+VL DLRPL + GN+ E+ NITVNKNA+ F + G+R+GT A+T+RG+ E D +I K K+LK+ L N K I+ +K DV SS+ + Sbjct: 251 VFPRLQGGPLMHVIAAKAVAFKEAMTEEFREYAHQTVKNAKVLAEELKAEGLRIVSGGTDSHIVLVDLRPLNVKGNQAEEALGRANITVNKNAIPFDPEKPMVTSGIRLGTAALTTRGMKENDMRRIA--------------KNIVKVLKN----LDNEKIIQEVKDDVLSLCSSYPL 410
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_METPE (Serine hydroxymethyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=glyA PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27 Identity = 75/197 (38.07%), Postives = 105/197 (53.30%), Query Frame = 1 Query: 7 PEGAVY----DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 582 P G V ++ I+ A+FP +QGGP H + AV K+A P+FK Y++QV NA AL L G LV+GGT+NHL+L DL GLTG + E ITVNKN + ++ S G+RIGTPA+TSRG+ E + QIGE++ R + K + + I A+K +V AS + + Sbjct: 232 PRGGVIMCNEEYGAMIDKAIFPGMQGGPLMHTIAGKAVCFKEALQPSFKQYSRQVVKNAQALAETLGEAGLRLVSGGTDNHLILIDLSNRGLTGLEAEVALGKAGITVNKNTIPNENRSPFVTSGLRIGTPAVTSRGMKEDEMHQIGEYIIRVL------------------KDIQDEATISAVKNEVTALASRYSL 410
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BRAJA (Serine hydroxymethyltransferase OS=Bradyrhizobium japonicum GN=glyA PE=3 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27 Identity = 69/152 (45.39%), Postives = 88/152 (57.89%), Query Frame = 1 Query: 37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK 489 K+N A+FP LQGGP H + A AVA +A P FK YAK V NA AL + G+ +V+GGT+NHL+L DLRP GL GN EK IT NKN + F G+R+GTPA T+RG +F+Q+G + A L Q + GK Sbjct: 260 KLNSAIFPGLQGGPLMHVIAAKAVAFGEALRPDFKVYAKNVVENAKALAEAMKSHGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGGMI--AEVLNAIAQSDDGK 409 The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bpback to top |