FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAA (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 64/140 (45.71%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            DF  ++N +VFP  QGGP  H +   AVA  +A  P F+ YA Q++ NA AL   L  +G +LV+GGT+NHL+L DLR  GLTG + ++  D   ITVNKNA+  D    +   G+RIGTPA+T+RG+ E +  QI  ++
Sbjct:  242 DFAKQLNSSVFPGTQGGPLMHVIAGKAVAFGEALRPEFRQYAAQIRRNARALAEGLMAQGLTLVSGGTDNHLMLVDLRSTGLTGAQAQRALDKAAITVNKNAIPDDPQPPMKTSGIRIGTPAVTTRGMREPEMAQIAAWI 381          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA2_VIBCH (Serine hydroxymethyltransferase 2 OS=Vibrio cholerae GN=glyA2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            +   KIN AVFP LQGGP  H + A AVA  +A  P F+ Y   V  NA  L   L  +G  +VTGGT+ HL+L DLRP GL GN+VE+  +   IT NKN + F +   +   G+R+GTPA TSRG   ++F+ IGE++
Sbjct:  260 EIHKKINSAVFPGLQGGPLMHVIAAKAVAFGEALGPEFRTYIDSVIDNAKVLAEVLQTRGCDIVTGGTDTHLMLVDLRPKGLKGNQVEQALERAGITCNKNGIPFDEEKPMITSGIRLGTPAGTSRGFGREEFKLIGEWI 399          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA2_RHIME (Serine hydroxymethyltransferase 2 OS=Rhizobium meliloti GN=glyA2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 63/140 (45.00%), Postives = 87/140 (62.14%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            D   K+N AVFP LQGGP  H + A AVAL +A    F+ YA+Q+ ANA AL + LT +GY +V+GGT+ HL+L DLR  G++G   E+      +T NKN + F  +      G+R+GTPA TSRG  E +F ++G  +
Sbjct:  246 DVAKKVNSAVFPGLQGGPLMHVIAAKAVALGEALEDNFRQYARQMVANARALASALTERGYDIVSGGTDTHLILVDLRSKGVSGKDAEEALGRAGLTCNKNGIPFDPAPPAVTSGIRLGTPAATSRGFREAEFNEVGALI 385          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_ORITI (Serine hydroxymethyltransferase OS=Orientia tsutsugamushi (strain Ikeda) GN=glyA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 61/136 (44.85%), Postives = 84/136 (61.76%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            KIN AVFP +QGGP  H + A A+A  +A  P +K Y  QV  NA  L   L  +GY+++TGGT+NH++L DLR   +TG + E L D   IT NK  + F  +S     G+R+GTPA T+RG  E DF  +G+++
Sbjct:  240 KINSAVFPGMQGGPLMHVIAAKAIAFSEALMPQYKEYINQVMLNAKVLAKLLQDRGYNILTGGTDNHMLLVDLRGKNITGQEAEYLLDAAGITCNKQVMPFDTTSPTITSGIRLGTPACTTRGFKENDFITVGKYI 375          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BEII9 (Serine hydroxymethyltransferase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=glyA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            D   KIN AVFP LQGGP  H + A AVA  +A  P F+ YA+QV  NA  L + L  KG+++ +GGT+NHL+L DLRP  LTG   E      +IT NKN V F  +S     G+R+G+PA TSRG   K+F+ + + +
Sbjct:  258 DIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALRPDFRLYAQQVVVNAGTLASRLVEKGFAISSGGTDNHLMLVDLRPKQLTGKAAEAALGRASITCNKNGVPFDTASPFVTSGIRLGSPAATSRGFGTKEFQDVADLI 397          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_ALKMQ (Serine hydroxymethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glyA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 65/131 (49.62%), Postives = 86/131 (65.65%), Query Frame = 1
Query:   40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 429
            I+ A+FP LQGGP  H + A AVA K+A  P FKAY +QV  NA ALG  L  +G+ LV+ GT+ HL+L DLR   +TG   E+L D   ITVNKN + F   S     G+RIGTPA+T+RG+ E++ ++I
Sbjct:  248 IDKAIFPGLQGGPLMHVIAAKAVAFKEALEPGFKAYQEQVIKNAKALGEELKKQGFDLVSDGTDTHLLLIDLRNKNITGKDAERLFDEVGITVNKNTIPFDPQSPFVTSGIRIGTPAVTTRGMKEEEMKKI 378          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA2_VIBPA (Serine hydroxymethyltransferase 2 OS=Vibrio parahaemolyticus GN=glyA2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 76/192 (39.58%), Postives = 101/192 (52.60%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEAL-----KADVEKFASSFDM 582
            D   KIN AVFP LQGGP  H + A AVA  +A  P FK Y   V  NA  L   L  +G  +VTGGT+ HL+L DLRP GL GNK E+  +   IT NKN + F     +   G+R+GTPA TSRG   ++F+ IG +                  + D   GLVNN + +A+     + +V++  S F +
Sbjct:  256 DIIKKINSAVFPGLQGGPLMHVIAAKAVAFGEALGPEFKTYIDSVINNAKVLAEVLQTRGCDIVTGGTDTHLMLVDLRPKGLKGNKAEEALERAGITCNKNGIPFDTEKPMITSGIRLGTPAGTSRGFGAEEFKLIGNW------------------IGDVLDGLVNNPEGDAIVEKRVRKEVKELCSRFPL 429          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_PERMH (Serine hydroxymethyltransferase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=glyA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 73/178 (41.01%), Postives = 99/178 (55.62%), Query Frame = 1
Query:   52 VFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 582
            VFP LQGGP  H + A AVA K+A T  F+ YA Q   NA  L   L  +G  +V+GGT++H+VL DLRPL + GN+ E+     NITVNKNA+ F     +   G+R+GT A+T+RG+ E D  +I               K   K+LK+    L N K I+ +K DV    SS+ +
Sbjct:  251 VFPRLQGGPLMHVIAAKAVAFKEAMTEEFREYAHQTVKNAKVLAEELKAEGLRIVSGGTDSHIVLVDLRPLNVKGNQAEEALGRANITVNKNAIPFDPEKPMVTSGIRLGTAALTTRGMKENDMRRIA--------------KNIVKVLKN----LDNEKIIQEVKDDVLSLCSSYPL 410          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_METPE (Serine hydroxymethyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=glyA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 75/197 (38.07%), Postives = 105/197 (53.30%), Query Frame = 1
Query:    7 PEGAVY----DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 582
            P G V     ++   I+ A+FP +QGGP  H +   AV  K+A  P+FK Y++QV  NA AL   L   G  LV+GGT+NHL+L DL   GLTG + E       ITVNKN +  ++ S     G+RIGTPA+TSRG+ E +  QIGE++ R +                  K + +   I A+K +V   AS + +
Sbjct:  232 PRGGVIMCNEEYGAMIDKAIFPGMQGGPLMHTIAGKAVCFKEALQPSFKQYSRQVVKNAQALAETLGEAGLRLVSGGTDNHLILIDLSNRGLTGLEAEVALGKAGITVNKNTIPNENRSPFVTSGLRIGTPAVTSRGMKEDEMHQIGEYIIRVL------------------KDIQDEATISAVKNEVTALASRYSL 410          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BRAJA (Serine hydroxymethyltransferase OS=Bradyrhizobium japonicum GN=glyA PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 69/152 (45.39%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK 489
            K+N A+FP LQGGP  H + A AVA  +A  P FK YAK V  NA AL   +   G+ +V+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +  A  L    Q + GK
Sbjct:  260 KLNSAIFPGLQGGPLMHVIAAKAVAFGEALRPDFKVYAKNVVENAKALAEAMKSHGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGGMI--AEVLNAIAQSDDGK 409          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLAA7.667e-2845.71Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA2_VIBCH7.667e-2846.43Serine hydroxymethyltransferase 2 OS=Vibrio choler... [more]
GLYA2_RHIME7.667e-2845.00Serine hydroxymethyltransferase 2 OS=Rhizobium mel... [more]
GLYA_ORITI1.001e-2744.85Serine hydroxymethyltransferase OS=Orientia tsutsu... [more]
GLYA_BEII91.001e-2746.43Serine hydroxymethyltransferase OS=Beijerinckia in... [more]
GLYA_ALKMQ1.001e-2749.62Serine hydroxymethyltransferase OS=Alkaliphilus me... [more]
GLYA2_VIBPA1.001e-2739.58Serine hydroxymethyltransferase 2 OS=Vibrio paraha... [more]
GLYA_PERMH1.308e-2741.01Serine hydroxymethyltransferase OS=Persephonella m... [more]
GLYA_METPE1.308e-2738.07Serine hydroxymethyltransferase OS=Methanosphaerul... [more]
GLYA_BRAJA1.308e-2745.39Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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