FC872848
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2) HSP 1 Score: 164.851 bits (416), Expect = 3.920e-40 Identity = 85/196 (43.37%), Postives = 121/196 (61.73%), Query Frame = 1 Query: 22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL-----TLE--IQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 588 Y+ E KINF+VFP QGGPHNH +GA+AVALKQA +P FK Y +++ N+ LT GY LV+GGT+NHL++ DL + G +VE + NI NKN + GD SAL P G+RIGTPAMT+RG ++F Q+ +++ AV L TLE + + L +F K + ++ AL ++ K+ + +PG Sbjct: 293 YELEKKINFSVFPGHQGGPHNHTIGAMAVALKQAMSPEFKEYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKLDARSRLNEFKKLCNESSEVAALSGEISKWVGQYPVPG 488
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34 Identity = 75/145 (51.72%), Postives = 96/145 (66.21%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 456 +F +I+ AVFP +QGGP H + A AVA KQ S P ++AY QV NA AL L +GY LVTGGT+NHL+L DLRP G+TG E L D +ITVNKNA+ D + G+RIGTPAMT+RG+ E + QI + + RA+T Sbjct: 241 EFAKEIDKAVFPGMQGGPLMHIIAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAIT 385
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33 Identity = 73/137 (53.28%), Postives = 92/137 (67.15%), Query Frame = 1 Query: 37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLH 444 K++ A+FP LQGGP H + A AVA ++A PAF AY KQ+ ANA AL LT +G+ LV+GGT+NHL+L DLR LTG + EK D C ITVNKNA+ F S G+RIGTPA TSRG+ E +Q+ E +H Sbjct: 248 KVDKAIFPGLQGGPLMHIIAAKAVAFQEAMAPAFTAYQKQIAANAAALAKGLTDRGFQLVSGGTDNHLMLVDLRNKQLTGKEAEKRLDECRITVNKNAIPFDPQSPFVTSGIRIGTPAATSRGMDEAAMDQVAEAIH 384
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 2.721e-33 Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 1 Query: 13 GAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEI 471 G D + +INFAVFP LQGGPHNH + +A AL A TP F Y ++V N+ L + L G ++TGGT+NH++L DLR G+ G VE +CD I++N+NA+ G+SS L+P G+R+GT A+T+RG ++ ++G+ + V L E+ Sbjct: 264 GETVDLDARINFAVFPMLQGGPHNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKLCREM 416
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31 Identity = 72/167 (43.11%), Postives = 101/167 (60.48%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT------LTLEIQKEYGKLLKDF 504 +F +I+ AVFP +QGGP H + A AVA K+A TP FK Y KQ+ NA A+ L GY LV+GGT+NHL+L DLR G+TG + EK + ITVNKNA+ F G+RIGTPA+T+RG+ E + + +H ++ + +++KE +L K F Sbjct: 241 EFAKEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVARLIHEVLSNFKDSKVKEKVKKEVEELCKQF 407
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31 Identity = 75/155 (48.39%), Postives = 99/155 (63.87%), Query Frame = 1 Query: 37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLK 498 KIN AVFP +QGGP H + A AVA K+A P FK Y +++ +NA AL + L +G+ LV+GGT+NHL+L DLR +TG + ++L D +TVNKNAV F G+RIGTPA+TSRGL E D QI E + A+ E + + GKL K Sbjct: 250 KINRAVFPGVQGGPLMHVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAI----EHRDDRGKLEK 400
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31 Identity = 72/167 (43.11%), Postives = 101/167 (60.48%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT------LTLEIQKEYGKLLKDF 504 +F +I+ AVFP +QGGP H + A AVA K+A +P FK Y KQ+ NA A+ L GY LV+GGT+NHL+L DLR G+TG + EK + ITVNKNA+ F G+RIGTPA+T+RG+ E + I +H ++ + +++KE +L K F Sbjct: 241 EFAKEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIARLIHEVLSNFKDERVKEKVKKEVEELCKQF 407
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30 Identity = 68/140 (48.57%), Postives = 88/140 (62.86%), Query Frame = 1 Query: 25 DFEDKINF--AVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 435 + +DK NF A+FP +QGGP H + A AV K+A P FK Y KQ+ NA AL L +G +V+ GT+NHL+L DL P GLTG +EKL D +IT NKN + D G+R+GTPA TSRGL E DF+++ E Sbjct: 243 EMQDKYNFNKAIFPGIQGGPLMHVIAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVAE 382
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30 Identity = 68/140 (48.57%), Postives = 92/140 (65.71%), Query Frame = 1 Query: 40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 456 I+ ++FP +QGGP H + A AVALK+A T FK Y Q+ NA AL L +G+ LV+GGT+NHL+L DLR G+TG EK+ D NIT NKNAV F S + G+R+GTPA+T+RG E D ++ + +H A+T Sbjct: 249 IDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVADIIHDALT 388
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30 Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 1 Query: 40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 456 I+ ++FP +QGGP H + A AVALK+A T F+ Y Q+ NA AL L +G+ LV+GGT+NHL+L DLR G+TG EK D NIT NKNA+ F S + G+R+GTPA+T+RG E+D ++ + +H A+T Sbjct: 251 IDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVADIIHDALT 390 The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bpback to top |