FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_GLUOX (Serine hydroxymethyltransferase OS=Gluconobacter oxydans GN=glyA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 468
            D   K+N AVFP LQGGP  H +   AVA  +A +  FKAY K+V ANA AL + L  +G+ +VTGGT++HL+L DLRP  +TG   E + +   IT NKNA+ F         G+R+G+PA T+RG  E +F ++G  +   +T  LE
Sbjct:  256 DLAKKVNSAVFPGLQGGPLMHVIAGKAVAFGEALSDEFKAYQKRVLANARALADELQNRGFDIVTGGTDSHLILVDLRPKKVTGKLAEAILERAGITANKNAIPFDPEKPFVTSGIRLGSPAATARGFGEAEFREVGRMIDEVLTAALE 404          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_EXIS2 (Serine hydroxymethyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glyA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 67/135 (49.63%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            I+ ++FP +QGGP  H + A AVA  +A  P FK Y +QV ANA  LG  LT +G  +V+GGT+NHL+L DL+PLG+TG   E   D   ITVNKN + F  +S     G+RIGT AMTSRG  E + +QI E +
Sbjct:  251 IDKSIFPGIQGGPLMHVIAAKAVAFAEALAPEFKDYIEQVVANAKVLGEELTARGLRIVSGGTDNHLLLVDLQPLGITGKLAEHALDEAGITVNKNTIPFDPASPFVTSGIRIGTAAMTSRGFKEAEMKQIAELI 385          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_ALKOO (Serine hydroxymethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            I+ A+FP LQGGP  H + A AV+ K+A +P FKAY +QV  NA  LG  L  +G++LV+GGT+NHL+L DLR   +TG   EKL D   +TVNKN + +   S     G+RIGTPA+T+RG+ E D   I E +
Sbjct:  248 IDKAIFPGLQGGPLMHVIAAKAVSFKEALSPEFKAYQEQVIKNAAKLGEELKSRGFNLVSGGTDNHLLLLDLRNKNITGKDAEKLLDEVGVTVNKNTIPYDPESPFVTSGIRIGTPAVTTRGMKEDDMVTIAEII 382          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICRS (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Sheila Smith) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 74/174 (42.53%), Postives = 99/174 (56.90%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 555
            KIN A+FP LQGGP  H + A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  250 KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQQV 405          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICRO (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Iowa) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 74/174 (42.53%), Postives = 99/174 (56.90%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 555
            KIN A+FP LQGGP  H + A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  250 KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQQV 405          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICAH (Serine hydroxymethyltransferase OS=Rickettsia akari (strain Hartford) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 72/166 (43.37%), Postives = 96/166 (57.83%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD 531
            KIN A+FP LQGGP  H V A AVA  ++  P +K+Y KQ+ +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  E+DF  +G                   ++ D   GL NNKD
Sbjct:  250 KINSALFPGLQGGPLMHIVAAKAVAFLESLQPEYKSYIKQIISNAKALASSLQERGYDILTGGTDNHIVLVDLRKNGITGKLAANSLDNAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEQDFVSVGH------------------MVADILDGLKNNKD 397          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_POLNS (Serine hydroxymethyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 65/140 (46.43%), Postives = 90/140 (64.29%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            + E  INFAVFP LQGGP  H + A AVA K+A+ P FK Y KQV ANA AL   L  +G  +V+GGT++H++L DLR   +TG + E++    +IT NKN +  D    +   G+R+G+PAMT+RG  E +  Q+G F+
Sbjct:  244 EHEKAINFAVFPGLQGGPLMHVIAAKAVAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKSMTGKEAERVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEARQVGNFI 383          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_LYSSC (Serine hydroxymethyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 64/140 (45.71%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            ++E K+N +VFP +QGGP  H + A AVA  +   P FK YAKQ+K NA AL   L  +G  +V+GGT+NHL+L +++ LGLTG   E   D   IT NKN + +   S     G+RIGTPA+TSRG  E+D +++G  +
Sbjct:  243 EWEQKLNKSVFPGIQGGPLMHVIAAKAVAFGEVLQPEFKDYAKQIKLNAKALAEVLIAEGVEIVSGGTDNHLLLLNVKSLGLTGKVAEHALDEVGITTNKNTIPYDTESPFVTSGIRIGTPAVTSRGFKEEDMKEVGAII 382          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_DEIGD (Serine hydroxymethyltransferase OS=Deinococcus geothermalis (strain DSM 11300) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 75/184 (40.76%), Postives = 103/184 (55.98%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 585
            KI+ AVFP  QGGP  H + A AVA  +A  P FK YA Q+  NA AL      +GY +V+GGT+NHL + DLRP GL G K  +  D  +IT++K+ + +     L  GG+RIGTPA+T+RG+ E D E++ + + RA+                  KG       E +KA+V  FA SF +P
Sbjct:  254 KIDRAVFPGYQGGPLEHVIAAKAVAFGEALQPEFKDYAAQIIRNAQALAGAFQNRGYRVVSGGTDNHLFVLDLRPQGLNGTKATRRLDANDITISKSTLPYDTEKILHGGGIRIGTPAITTRGMKEADMERVADLIDRAL------------------KG-------EDVKAEVHAFAGSFPLP 412          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICPU (Serine hydroxymethyltransferase OS=Rickettsia peacockii (strain Rustic) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 74/174 (42.53%), Postives = 99/174 (56.90%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 555
            KIN A+FP LQGGP  H + A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  250 KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQKV 405          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GLUOX6.272e-3044.30Serine hydroxymethyltransferase OS=Gluconobacter o... [more]
GLYA_EXIS21.070e-2949.63Serine hydroxymethyltransferase OS=Exiguobacterium... [more]
GLYA_ALKOO1.070e-2948.89Serine hydroxymethyltransferase OS=Alkaliphilus or... [more]
GLYA_RICRS1.397e-2942.53Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_RICRO1.397e-2942.53Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_RICAH1.397e-2943.37Serine hydroxymethyltransferase OS=Rickettsia akar... [more]
GLYA_POLNS1.397e-2946.43Serine hydroxymethyltransferase OS=Polynucleobacte... [more]
GLYA_LYSSC1.397e-2945.71Serine hydroxymethyltransferase OS=Lysinibacillus ... [more]
GLYA_DEIGD1.397e-2940.76Serine hydroxymethyltransferase OS=Deinococcus geo... [more]
GLYA_RICPU1.825e-2942.53Serine hydroxymethyltransferase OS=Rickettsia peac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
back to top