FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RHOFD (Serine hydroxymethyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   31 EDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 417
            E  IN A+FP LQGGP  H + A AVA K+A  P FK Y +QV  NA  +   L  +G  +V+G TE+H++L DLR   +TG + E +    ++T+NKNA+  D    +   GVRIGTPAMT+RG  +++
Sbjct:  246 EKAINSAIFPGLQGGPLMHVIAAKAVAFKEALQPEFKVYQQQVLTNARVVAETLVSRGLRIVSGRTESHVMLVDLRSKSITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEE 375          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_MYCMS (Serine hydroxymethyltransferase OS=Mycoplasma mycoides subsp. mycoides SC GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453
            +F  K++ AVFP  QGGP  + +     AL +AST  FK Y KQ+  N  AL N L   G  LV GG++NHL+  D++  L +TG K EK+ +   I  NKN + F         G+R+GTPAMT+RG  E++F+Q+G  +  A+
Sbjct:  239 EFAKKVDLAVFPGSQGGPLENLIAGKTQALLEASTDEFKEYGKQIVKNTKALANVLQENGLRLVAGGSDNHLINVDVKSTLRITGKKAEKILESIGIICNKNMIPFDTEKPFYTSGIRLGTPAMTTRGFKEEEFKQVGLIIVNAL 383          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_KOSOT (Serine hydroxymethyltransferase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 66/174 (37.93%), Postives = 96/174 (55.17%), Query Frame = 1
Query:   40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV--------TLTLEIQKEYGKLLKDFNKGLVNNKDI 534
            IN AVFP +QGGP  H + A AVA  +A    FK Y  ++  NA AL   L   G  +V+GGT+ HL L DL P  +TG   EK  +  +ITVNKN +  ++ S     G+RIGTPA+T+RG+ E + + I E + + +        T+  EI++E  K + +  +     KD+
Sbjct:  248 INKAVFPGIQGGPLMHVIAAKAVAFGEALKDEFKEYQMRIITNAKALAKELENLGLRIVSGGTDTHLFLVDLNPKNVTGKAAEKALESADITVNKNTIPKETRSPFVTSGIRIGTPAVTTRGMGESEMKVIAELIVKVIDNIQDEKGTIPEEIREEVKKAVHELTEKFPLYKDL 421          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPS (Serine hydroxymethyltransferase OS=Clostridium perfringens (strain SM101 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 59/135 (43.70%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   52 VFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453
            +FP +QGGP  H + A AV  K+A  P+FK Y +QV  NA  L   L   G+ LV+ GT+NHL+L DL    +TG   E L D   IT+NKN V  ++ S     GVRIGTPA+T+RG  E++ ++I   ++ A+
Sbjct:  252 IFPGIQGGPLMHIIAAKAVCFKEALEPSFKTYMEQVVKNAHVLAEALESYGFKLVSNGTDNHLILVDLTNKDITGKDAEILLDSIGITLNKNTVPNETRSPFVTSGVRIGTPAITTRGFKEEEMKEIASIINDAI 386          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPE (Serine hydroxymethyltransferase OS=Clostridium perfringens GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 59/135 (43.70%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   52 VFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453
            +FP +QGGP  H + A AV  K+A  P+FK Y +QV  NA  L   L   G+ LV+ GT+NHL+L DL    +TG   E L D   IT+NKN V  ++ S     GVRIGTPA+T+RG  E++ ++I   ++ A+
Sbjct:  252 IFPGIQGGPLMHIIAAKAVCFKEALEPSFKTYMEQVVKNAHVLAEALEAYGFKLVSNGTDNHLILVDLTNKDITGKDAEILLDSIGITLNKNTVPNETRSPFVTSGVRIGTPAITTRGFKEEEMKEIASIINDAI 386          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK5 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 61/154 (39.61%), Postives = 89/154 (57.79%), Query Frame = 1
Query:    7 PEGAVYDFEDKINFA----VFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453
            P G     ++K   A    +FP +QGGP  H + A AV   +A    +K Y  Q+  NA   G  L   G+ LV+GGT+NHL+L DL    +TG  +E+L D  NITVNKNA+ F         G+R+GTPA+T+RG  E++ +++  F+++AV
Sbjct:  233 PRGGAIICKEKYGAALDKTIFPGIQGGPLMHIIAAKAVCFGEALKDEYKEYIDQIIKNAKVFGEELVKYGFRLVSGGTDNHLLLVDLTNKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAYFINKAV 386          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK1 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 61/154 (39.61%), Postives = 89/154 (57.79%), Query Frame = 1
Query:    7 PEGAVYDFEDKINFA----VFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453
            P G     ++K   A    +FP +QGGP  H + A AV   +A    +K Y  Q+  NA   G  L   G+ LV+GGT+NHL+L DL    +TG  +E+L D  NITVNKNA+ F         G+R+GTPA+T+RG  E++ +++  F+++AV
Sbjct:  233 PRGGAIICKEKYGAALDKTIFPGIQGGPLMHIIAAKAVCFGEALKDEYKEYIDQIIKNAKVFGEELVKYGFRLVSGGTDNHLLLVDLTNKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAYFINKAV 386          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BACV8 (Serine hydroxymethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 63/153 (41.18%), Postives = 87/153 (56.86%), Query Frame = 1
Query:    7 PEGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL--GLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 456
            P+G +      ++ AVFP +QGGP  H + A AVA  +   P +K Y  QVK NA  L   L  +G+++V+GGT+NH +L DLR     LTG   EK     +ITVNKN V F   SA    G+R+GTPA+T+RG  E    +I E +   ++
Sbjct:  247 PKGEIKMMSQLLDSAVFPGIQGGPLEHVIAAKAVAFGECLQPEYKEYQTQVKKNAAVLAQALIDRGFTIVSGGTDNHSMLVDLRTKYPDLTGKVAEKALVAADITVNKNMVPFDSRSAFQTSGIRLGTPAITTRGAKEDLMLEIAEMIETVLS 399          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BACFR (Serine hydroxymethyltransferase OS=Bacteroides fragilis GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 1
Query:    7 PEGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL--GLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 456
            P+G +      ++ AVFP +QGGP  H + A AVA  +   P +K Y KQV+ NA  L   L  +G+++V+GGT+NH +L DLR     LTG   EK     +ITVNKN V F   SA    G+R+GTPA+T+RG  E    +I E +   ++
Sbjct:  247 PKGEIKMMSQLLDSAVFPGIQGGPLEHVIAAKAVAFGECLQPEYKEYQKQVQKNAAVLAQALIDRGFTIVSGGTDNHSMLVDLRSKYPTLTGKVAEKALVSADITVNKNMVPFDSRSAFQTSGIRLGTPAITTRGAKEDLMLEIAEMIETVLS 399          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BACFN (Serine hydroxymethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 1
Query:    7 PEGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL--GLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 456
            P+G +      ++ AVFP +QGGP  H + A AVA  +   P +K Y KQV+ NA  L   L  +G+++V+GGT+NH +L DLR     LTG   EK     +ITVNKN V F   SA    G+R+GTPA+T+RG  E    +I E +   ++
Sbjct:  247 PKGEIKMMSQLLDSAVFPGIQGGPLEHVIAAKAVAFGECLQPEYKEYQKQVQKNAAVLAQALIDRGFTIVSGGTDNHSMLVDLRSKYPTLTGKVAEKALVSADITVNKNMVPFDSRSAFQTSGIRLGTPAITTRGAKEDLMLEIAEMIETVLS 399          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_RHOFD1.353e-2444.62Serine hydroxymethyltransferase OS=Rhodoferax ferr... [more]
GLYA_MYCMS1.353e-2441.38Serine hydroxymethyltransferase OS=Mycoplasma myco... [more]
GLYA_KOSOT1.353e-2437.93Serine hydroxymethyltransferase OS=Kosmotoga olear... [more]
GLYA_CLOPS1.353e-2443.70Serine hydroxymethyltransferase OS=Clostridium per... [more]
GLYA_CLOPE1.353e-2443.70Serine hydroxymethyltransferase OS=Clostridium per... [more]
GLYA_CLOK51.353e-2439.61Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOK11.353e-2439.61Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_BACV81.353e-2441.18Serine hydroxymethyltransferase OS=Bacteroides vul... [more]
GLYA_BACFR1.353e-2441.18Serine hydroxymethyltransferase OS=Bacteroides fra... [more]
GLYA_BACFN1.353e-2441.18Serine hydroxymethyltransferase OS=Bacteroides fra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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