FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_OLICO (Serine hydroxymethyltransferase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 66/140 (47.14%), Postives = 85/140 (60.71%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            D   KIN A+FP LQGGP  H + A AVA K+A  P FK YAK +  NA AL   L G G+ +V+GGT+NHL+L DLRP GL GN  E+      +T NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  257 DIAKKINSAIFPGLQGGPLMHVIAAKAVAFKEALQPDFKVYAKNIVENARALAETLRGHGFEIVSGGTDNHLMLVDLRPKGLKGNISERALVRSGLTCNKNGIPFDPEKPFVTSGLRLGTPATTTRGFGVAEFKQVGALI 396          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_OCEIH (Serine hydroxymethyltransferase OS=Oceanobacillus iheyensis GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 68/157 (43.31%), Postives = 98/157 (62.42%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 492
            +F  K++ A+FP +QGGP  H + A AV+ K+A +  FKAY+KQ+ ANA  LG  L  +G  +V+GGT+NHL+L D+ PL LTG   EK  D   IT NKN + F   S     G+RIGT A+T+RG  E++ ++I       ++LTL+  ++  KL
Sbjct:  241 EFAKKVDKAIFPGIQGGPLMHVIAAKAVSFKEALSDDFKAYSKQIVANAKLLGEALNKEGIRIVSGGTDNHLLLLDVTPLQLTGKVAEKALDDIGITTNKNTIPFDQESPFVTSGIRIGTAAVTTRGFGEEEMKEIASI----ISLTLKHHEDEAKL 393          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BRASO (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 67/139 (48.20%), Postives = 84/139 (60.43%), Query Frame = 1
Query:   28 FEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            F  K N A+FP LQGGP  H + A AVA  +A  P FKAYAK V  NA AL   L  +G+ +V+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  258 FTKKFNSAIFPGLQGGPLMHVIAAKAVAFAEALRPEFKAYAKNVVENAKALAESLRAQGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGSLI 396          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_SYNAS (Serine hydroxymethyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 67/166 (40.36%), Postives = 98/166 (59.04%), Query Frame = 1
Query:   28 FEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV------TLTLEIQKEYGKLLKDF 504
            ++  ++  VFP +QGGP  H + A AVA K+A T  FK Y  Q+  NA AL   L G+GY LV+GGT+NHL+L DL   GLTG + ++  D   ITVNKN + F     +   G+RIGTPA+TSRG+ E++   I   +   +         + +++E G+L ++F
Sbjct:  242 YQKTLSSRVFPGVQGGPLMHIIAAKAVAFKEALTDEFKDYQSQIVKNAQALAKELIGRGYRLVSGGTDNHLLLMDLTDKGLTGKEAQESLDSAGITVNKNGIPFDTRGPMVTSGIRIGTPALTSRGMKEEEMRTIARLIAEVLEHRDNEKHLMAVKEEVGRLCQNF 407          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BRASB (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 65/139 (46.76%), Postives = 84/139 (60.43%), Query Frame = 1
Query:   28 FEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            F  K+N A+FP LQGGP  H + A AVA  +A  P FK YAK +  NA AL   L  +G+ +V+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  259 FTKKLNSAIFPGLQGGPLMHVIAAKAVAFAEALRPEFKTYAKNIVENAKALAESLRAQGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGSLI 397          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA2_PHOPR (Serine hydroxymethyltransferase 2 OS=Photobacterium profundum GN=glyA2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 75/188 (39.89%), Postives = 98/188 (52.13%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEA-LKADVEKFASSFDM 582
            D   KIN AVFP LQGGP  H +   AVA  +A  P FK Y K V +NA  L   L  +G  +VT GT+ HL+L DLRP GL GN  E   +   IT NKN + F     +   G+R+GTPA TSRG    +F+QIGE++              G +L        +N ++E  +K  V+K  S F +
Sbjct:  256 DINKKINSAVFPGLQGGPLMHVIAGKAVAFGEALEPDFKIYIKNVISNAKVLAEVLQNRGCDIVTNGTDTHLMLVDLRPKGLKGNAAENALERAGITCNKNGIPFDTEKPMVTSGIRLGTPAGTSRGFGNDEFKQIGEWI--------------GDVLDGLAANPEDNSEVEKHVKQQVQKLCSRFPL 429          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_SILST (Serine hydroxymethyltransferase OS=Silicibacter sp. (strain TM1040) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 65/144 (45.14%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453
            D   K N A+FP +QGGP  H +   A A  +A  P FK+Y KQV+ANAVAL + L   G  +VTGGT+ H++L DLRP G+TGN V+K     +IT NKN + F         G+R+GTPA T+RG  E++F +I   +   V
Sbjct:  253 DLAKKFNSAIFPGIQGGPLMHVIAGKAAAFGEALKPEFKSYQKQVRANAVALADELIKGGLDIVTGGTDTHVMLVDLRPKGVTGNIVDKALGRAHITTNKNGIPFDPEKPTVTSGIRLGTPAGTTRGFGEEEFREIARLIVEVV 396          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICBR (Serine hydroxymethyltransferase OS=Rickettsia bellii (strain RML369-C) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 66/136 (48.53%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            KIN A+FP LQGGP  H + A AVA  ++  P +K+Y KQV  NA AL   L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F  +S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  250 KINSALFPGLQGGPLMHIIAAKAVAFLESLQPEYKSYIKQVIINAKALAGSLQERGYDILTGGTDNHIVLVDLRKDGITGKIAANSLDRAGITCNKNAIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVGHLI 385          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICB8 (Serine hydroxymethyltransferase OS=Rickettsia bellii (strain OSU 85-389) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 66/136 (48.53%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            KIN A+FP LQGGP  H + A AVA  ++  P +K+Y KQV  NA AL   L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F  +S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  250 KINSALFPGLQGGPLMHIIAAKAVAFLESLQPEYKSYIKQVIINAKALAGSLQERGYDILTGGTDNHIVLVDLRKDGITGKIAANSLDRAGITCNKNAIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVGHLI 385          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RHOP5 (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 66/133 (49.62%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 432
            K N A+FP LQGGP  H + A AVA K+A  P FK YAK V  NA AL   L G G+ +V+GGT+NHL+L DLRP  L GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G
Sbjct:  261 KFNSAIFPGLQGGPLMHVIAAKAVAFKEALQPDFKVYAKNVVENAKALAETLRGHGFDIVSGGTDNHLMLVDLRPKALKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGIRLGTPAATTRGFGVAEFQQVG 393          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_OLICO6.935e-2947.14Serine hydroxymethyltransferase OS=Oligotropha car... [more]
GLYA_OCEIH6.935e-2943.31Serine hydroxymethyltransferase OS=Oceanobacillus ... [more]
GLYA_BRASO6.935e-2948.20Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]
GLYA_SYNAS9.057e-2940.36Serine hydroxymethyltransferase OS=Syntrophus acid... [more]
GLYA_BRASB9.057e-2946.76Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]
GLYA2_PHOPR9.057e-2939.89Serine hydroxymethyltransferase 2 OS=Photobacteriu... [more]
GLYA_SILST1.183e-2845.14Serine hydroxymethyltransferase OS=Silicibacter sp... [more]
GLYA_RICBR1.545e-2848.53Serine hydroxymethyltransferase OS=Rickettsia bell... [more]
GLYA_RICB81.545e-2848.53Serine hydroxymethyltransferase OS=Rickettsia bell... [more]
GLYA_RHOP51.545e-2849.62Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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