FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RHOP2 (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain HaA2) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 67/136 (49.26%), Postives = 82/136 (60.29%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            K N A+FP LQGGP  H + A AVA K+A  P FK YAK V  NA AL   L   G+ LV+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  261 KFNSAIFPGLQGGPLMHVIAAKAVAFKEALQPDFKVYAKNVVENAKALAETLRAAGFDLVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGNLI 396          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_FERNB (Serine hydroxymethyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 69/170 (40.59%), Postives = 103/170 (60.59%), Query Frame = 1
Query:   40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALK 546
            IN A+FP +QGGP  H + A AV  K+A +  FKAY  Q+  NA AL   L  +G  +V+GGT+ HL+L DL PL +TG   E     C+ITVNKN +  ++ S     G+R+GTPA+T+RG+ E+  E+I + +   VT+   ++ E G + ++  K  V+++ IE  K
Sbjct:  248 INKAIFPGIQGGPLMHVIAAKAVCFKEALSDEFKAYQNQIVKNAKALAKALENRGLRIVSGGTDTHLMLVDLNPLNVTGKAAETALGYCHITVNKNTIPNETRSPFVASGIRLGTPALTTRGMKEEQMEEIADLI---VTVLKNVKDEEGNVDEEVAK-RVSDRVIELCK 413          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_DESVV (Serine hydroxymethyltransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 74/178 (41.57%), Postives = 98/178 (55.06%), Query Frame = 1
Query:    1 GQPEGAVYDFEDK---INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV------TLTLEIQKEYGKLLKDF 504
            G   G +   ED    +N  +FP +QGGP  H + A AVA  +A  PAFK Y KQV  NA AL   LT  G+ LV+GGT+NHL+L DL    +TG   E   D   ITVNKN V F   S     GVR+GTPA+T+RG+   + E++G ++  A+      T   EI +E  +  + F
Sbjct:  230 GPRGGMILSTEDNGKTLNSQIFPGIQGGPLMHVIAAKAVAFGEALRPAFKEYQKQVVDNAAALAGVLTAAGFDLVSGGTDNHLMLVDLTSKDVTGKDAEIALDKAGITVNKNTVPFETRSPFVTSGVRLGTPALTTRGMKAAEMEKVGGWIVDAIANTTNETRLAEISREVERFARQF 407          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_DESVH (Serine hydroxymethyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 74/178 (41.57%), Postives = 98/178 (55.06%), Query Frame = 1
Query:    1 GQPEGAVYDFEDK---INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV------TLTLEIQKEYGKLLKDF 504
            G   G +   ED    +N  +FP +QGGP  H + A AVA  +A  PAFK Y KQV  NA AL   LT  G+ LV+GGT+NHL+L DL    +TG   E   D   ITVNKN V F   S     GVR+GTPA+T+RG+   + E++G ++  A+      T   EI +E  +  + F
Sbjct:  230 GPRGGMILSTEDNGKTLNSQIFPGIQGGPLMHVIAAKAVAFGEALRPAFKEYQKQVVDNAAALAGVLTAAGFDLVSGGTDNHLMLVDLTSKDVTGKDAEIALDKAGITVNKNTVPFETRSPFVTSGVRLGTPALTTRGMKAAEMEKVGGWIVDAIANTTNETRLAEISREVERFARQF 407          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 66/146 (45.21%), Postives = 93/146 (63.70%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 459
            ++   I+ A+FP  QGGP  H + A A A  +A  P FKAY +Q+  NA AL   L  +G++LV+GGT+NHL+L DLR  G+TG + E L D  +IT NKNA+ F         G+R+GTPA+T+RG  EKD +++ E +  A+TL
Sbjct:  243 EYAQLIDKAIFPGSQGGPLMHVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEII--ALTL 386          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICM5 (Serine hydroxymethyltransferase OS=Rickettsia massiliae (strain Mtu5) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 73/174 (41.95%), Postives = 98/174 (56.32%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 555
            KIN A+FP LQGGP  H + A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +                  G ++ D   GL NN+D   L+  V
Sbjct:  250 KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKFAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLV------------------GYMVADILDGLKNNEDNSDLEQKV 405          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP8 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 64/140 (45.71%), Postives = 90/140 (64.29%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            D   + + AVFP  QGGP  H + A  VA  +A  P FKAY+ QV AN+ AL   L  +G+ LV+GGT+NHL+L DLR +G+TG + ++L    NIT NKN V F   S     G+R+G+PA+T+RG+ E +F++IG  +
Sbjct:  247 DLGKQFDKAVFPGTQGGPLEHVIAAKGVAFGEALKPQFKAYSGQVIANSRALAAQLMERGFKLVSGGTDNHLMLVDLRSIGMTGKEADRLVSEINITANKNTVPFDPESPFVTSGLRLGSPALTTRGMGESEFKEIGNII 386          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BACHD (Serine hydroxymethyltransferase OS=Bacillus halodurans GN=glyA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 69/149 (46.31%), Postives = 92/149 (61.74%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 468
            +F  +I+ ++FP +QGGP  H + A AVA  +A  P FK+Y + +  NA  LG  LT +G  LV+GGT+NHL+L DLR LGLTG   EK  D   IT NKN + F   S     G+RIGT A+TSRGL E+  ++IG      + LTL+
Sbjct:  241 EFAKQIDKSIFPGIQGGPLMHVIAAKAVAFGEALQPEFKSYGEAIIRNAKRLGEKLTSEGIDLVSGGTDNHLLLLDLRSLGLTGKVAEKALDDVGITTNKNTIPFDPESPFVTSGIRIGTAAVTSRGLDEEAMDEIG----ATIALTLK 385          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_SYNFM (Serine hydroxymethyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 68/178 (38.20%), Postives = 99/178 (55.62%), Query Frame = 1
Query:   52 VFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 582
            +FP +QGGP  H + A AVA ++A  P+FK Y ++V A+A AL   L   GY LV+GGT+NHL+L DL P G+TG   E+  D   ITVNKN++ F         G+RIGTPA+ +RG+L    + +  F+HR +                  K   +   +  L+A+V +F S+F +
Sbjct:  250 IFPGIQGGPLMHVIAAKAVAFREALQPSFKEYQQRVVADAAALAQELKALGYRLVSGGTDNHLMLVDLTPQGVTGRVAEETLDKAGITVNKNSIPFDQQKPQVTSGIRIGTPALATRGILPHHMKAVAGFMHRGL------------------KSAGDEPALARLRAEVAEFCSAFPL 409          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RHOPB (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain BisB18) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 70/151 (46.36%), Postives = 87/151 (57.62%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 486
            K N A+FP LQGGP  H + A AVA K+A  P FK YAK V  NA AL   L G G+ +V+GGT+NHL+L DLRP  L GN  EK      IT NKN + +         G+R+GTPA T+RG    +F+Q+G  +  A  L    Q E G
Sbjct:  268 KFNSAIFPGLQGGPLMHVIAAKAVAFKEALQPDFKVYAKNVVENAKALAETLRGHGFDIVSGGTDNHLMLVDLRPKSLKGNVSEKALVRAGITCNKNGIPYDPEKPFVTSGIRLGTPAATTRGFGVAEFQQVGGMI--AEVLNAIAQSEDG 416          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_RHOP21.545e-2849.26Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]
GLYA_FERNB1.545e-2840.59Serine hydroxymethyltransferase OS=Fervidobacteriu... [more]
GLYA_DESVV1.545e-2841.57Serine hydroxymethyltransferase OS=Desulfovibrio v... [more]
GLYA_DESVH1.545e-2841.57Serine hydroxymethyltransferase OS=Desulfovibrio v... [more]
GLYA_DESRM1.545e-2845.21Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_RICM52.018e-2841.95Serine hydroxymethyltransferase OS=Rickettsia mass... [more]
GLYA_CYAP82.018e-2845.71Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_BACHD2.018e-2846.31Serine hydroxymethyltransferase OS=Bacillus halodu... [more]
GLYA_SYNFM2.635e-2838.20Serine hydroxymethyltransferase OS=Syntrophobacter... [more]
GLYA_RHOPB2.635e-2846.36Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
back to top