FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_MYXXD (Serine hydroxymethyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 64/139 (46.04%), Postives = 86/139 (61.87%), Query Frame = 1
Query:   40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453
            IN  +FP +QGGP  H +   AVA K+A +P FKAY +Q+ ANA AL   L   G  L +GGT+NHL+L DLRP  LTG   E++ D   ITVNKN + F     +   GVR+GTPA+T+RG+ E +   +G  +  A+
Sbjct:  249 INSQIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQRQIVANAKALAEALQRAGLRLTSGGTDNHLMLVDLRPKKLTGKVAEEVLDKAGITVNKNMIPFDPEKPMTTSGVRVGTPAITTRGMREAEMAVVGRLIGEAL 387          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_MICAN (Serine hydroxymethyltransferase OS=Microcystis aeruginosa (strain NIES-843) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            K + +VFP  QGGP  H V A AVA  +A  P FK Y+ QV ANA AL   L  +G  +VT GT+NHL+L DLR +G+TG + ++L    NIT NKN V F   S     G+R+G+PAMT+RGL E +F +IG  +
Sbjct:  251 KFDKSVFPGTQGGPLEHVVAAKAVAFGEALKPEFKIYSGQVIANAQALAGQLKARGIKIVTDGTDNHLMLLDLRSVGMTGKEADRLVSTINITANKNTVPFDPESPFVTSGLRLGSPAMTTRGLGETEFIEIGNII 386          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 66/140 (47.14%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            D+   +N  +FP +QGGP  H + A AVA K+A TP FK Y  Q+  NA AL   LT +G+ L +GGT+NHL+L DL    LTG   E+  D   ITVNKN + F   S     G+RIGTPA TS GL E + EQ+  F+
Sbjct:  241 DWAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALTPEFKQYQGQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGFI 380          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAD (Serine hydroxymethyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 65/140 (46.43%), Postives = 90/140 (64.29%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            +F  +IN +VFP  QGGP  H +   AVA  +A  P FK YA Q++ NA AL   L  +G +LV+GGT+NHL+L DLR  GLTG + ++  D   ITVNKNA+  D    +   G+RIGTPA+T+RG+ E++  QI  ++
Sbjct:  242 EFAKQINSSVFPGTQGGPLMHVIAGKAVAFGEALRPEFKQYAAQIRRNAKALAEGLHAQGLTLVSGGTDNHLMLVDLRSTGLTGAQAQRALDKAAITVNKNAIPDDPQPPMKTSGIRIGTPAVTTRGMREREMAQIAAWI 381          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA1_RHOPA (Serine hydroxymethyltransferase 1 OS=Rhodopseudomonas palustris GN=glyA1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 66/136 (48.53%), Postives = 81/136 (59.56%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            K N A+FP LQGGP  H + A AVA K+A  P FK Y K V  NA AL   L   G+ LV+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  260 KFNSAIFPGLQGGPLMHVIAAKAVAFKEALQPDFKVYTKNVVENAKALAETLRSAGFDLVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGHLI 395          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA1_RHILO (Serine hydroxymethyltransferase 1 OS=Rhizobium loti GN=glyA1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 66/140 (47.14%), Postives = 85/140 (60.71%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            D   K+N AVFP LQGGP  H + A AVA  +A  P+FK YA+ V ANA AL + L   G  +V+GGT+NHL+L DLRP   TG + E      NIT NKN + F         GVR+GTPA T+RG  + +F +IG+ +
Sbjct:  257 DIAKKMNSAVFPGLQGGPLMHVIAAKAVAFGEALKPSFKVYAESVAANAKALASSLKETGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGQAEFREIGKLI 396          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICCK (Serine hydroxymethyltransferase OS=Rickettsia canadensis (strain McKiel) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 64/136 (47.06%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            KIN A+FP LQGGP  H + A AVA ++A  P +K+Y +QV +NA AL   L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKN + F  +S     G+R+GTPA T+RG  EKDF  +   +
Sbjct:  250 KINSALFPGLQGGPLMHVIAAKAVAFQEALQPKYKSYIQQVISNAEALARILQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNTIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVAHMI 385          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RHOS4 (Serine hydroxymethyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453
            K+N A+FP +QGGP  H + A AVA  +A  P FKAYA QV  NA AL + L   G  +VTGGT+ HL+L DLRP G+ GN  EK     +IT NKN + F         GVR+GTPA T+RG  E +F +IG  +   V
Sbjct:  257 KVNSAIFPGIQGGPLMHVIAAKAVAFGEALRPEFKAYAAQVVKNAQALADELMKGGLDIVTGGTDTHLMLVDLRPKGVKGNATEKALGRAHITCNKNGIPFDPEKPTVTSGVRLGTPAGTTRGFGEAEFREIGRLIVEVV 396          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_PETMO (Serine hydroxymethyltransferase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 71/174 (40.80%), Postives = 101/174 (58.05%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEAL 543
            D    IN  +FP +QGGP  H + A AVA K+A +  FK Y KQV  N+ AL N L  K   +V+GGT+ HL L DL  L +TG  +EK    C+ITVNKN V  ++ S     G+RIGTPA+T+RG+ E++ ++I   + +     L+   E G + KD  + +   KD+ +L
Sbjct:  243 DIYKSINKIIFPGIQGGPLEHIIAAKAVAFKEAMSGEFKEYQKQVVRNSKALSNELASKNLRIVSGGTDTHLFLVDLSELNITGKALEKALGQCDITVNKNTVPKETLSPFVTSGIRIGTPAVTTRGMKEEEMKEIASMIAKVANNVLD---EEGNIDKDLAQEI--KKDVVSL 411          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 70/169 (41.42%), Postives = 103/169 (60.95%), Query Frame = 1
Query:    7 PEGAVY----DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLK 498
            P G V     +++ +I+ A+FP LQGGP  H + + AV+ ++A +  FK Y KQV  NA  L + L   GY LV GG++NHL+L DL+  G+TG K E++ D  +ITVNKNAV  D        G+R+GTPA+T+RG  E + +++ + L + +T  LE Q+   K  K
Sbjct:  231 PRGGVVLCKEEYKKEIDKAMFPGLQGGPLMHVIASKAVSFQEALSSEFKNYQKQVIKNASVLADELNNLGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEVAQLLDKVIT-GLEDQENLEKCKK 398          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_MYXXD2.635e-2846.04Serine hydroxymethyltransferase OS=Myxococcus xant... [more]
GLYA_MICAN2.635e-2848.53Serine hydroxymethyltransferase OS=Microcystis aer... [more]
GLYA_GEOBB2.635e-2847.14Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_CHLAD2.635e-2846.43Serine hydroxymethyltransferase OS=Chloroflexus ag... [more]
GLYA1_RHOPA2.635e-2848.53Serine hydroxymethyltransferase 1 OS=Rhodopseudomo... [more]
GLYA1_RHILO2.635e-2847.14Serine hydroxymethyltransferase 1 OS=Rhizobium lot... [more]
GLYA_RICCK3.442e-2847.06Serine hydroxymethyltransferase OS=Rickettsia cana... [more]
GLYA_RHOS43.442e-2847.86Serine hydroxymethyltransferase OS=Rhodobacter sph... [more]
GLYA_PETMO3.442e-2840.80Serine hydroxymethyltransferase OS=Petrotoga mobil... [more]
GLYA_NATTJ3.442e-2841.42Serine hydroxymethyltransferase OS=Natranaerobius ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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