FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_GLOVI (Serine hydroxymethyltransferase OS=Gloeobacter violaceus GN=gylA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 67/137 (48.91%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   49 AVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 456
            AVFP  QGGP  H + A AVA  +A  P FK YA  V ANA AL   LT +G +LV+GGT+NHL+L DLR + LTG + + L    NIT NKN + F   S     G+R+G+PAMT+RGL   +F +IGE +   +T
Sbjct:  254 AVFPGTQGGPLEHVIAAKAVAFGEALQPEFKTYAADVVANARALAERLTARGLTLVSGGTDNHLMLVDLRSVDLTGKQADLLMSDVNITTNKNTIPFDPQSPFVTSGLRLGSPAMTTRGLGTTEFGEIGEIIANRLT 390          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 65/135 (48.15%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            +N  +FP +QGGP  H + A AVA K+A TP FK Y +Q+  NA AL   LT +G+ L +GGT+NHL+L DL    LTG   E+  D   ITVNKN + F   S     G+RIGTPA TS GL E + EQ+  F+
Sbjct:  246 LNSNIFPGIQGGPLMHVIAAKAVAFKEALTPEFKKYQEQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGFI 380          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 68/154 (44.16%), Postives = 93/154 (60.39%), Query Frame = 1
Query:    7 PEGAVY----DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453
            P GA+     ++   I+ AVFP +QGGPH+    A+AVALK+AST +FK Y  QV  NA +L + L  KG++LVTGGTENHL+L DL    +TG +  K  D   I +N N+V F       P G+R+GT A+TSRG  + +   +G  + R V
Sbjct:  239 PRGAMIMCKAEYAKAIDKAVFPGMQGGPHDSTTAAIAVALKEASTDSFKKYTAQVVENAASLADVLIEKGFNLVTGGTENHLMLIDLSNKNITGKQAAKALDAAGIVLNCNSVPFDKRKPFDPSGIRLGTCAITSRGFAKAEMVILGNMMDRVV 392          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CAUCR (Serine hydroxymethyltransferase OS=Caulobacter crescentus GN=glyA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 66/140 (47.14%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453
            K+N AVFP LQGGP  H + A AVA  +A  P+FK YA+QV ANA AL   L   G ++V+GGT++HL+L DLRP G+TG   E   +   +T NKN V F  +      G+R+GTPA T+RG  E +F ++GE +   V
Sbjct:  257 KVNSAVFPGLQGGPLEHVIAAKAVAFGEALQPSFKDYARQVVANARALAEALLKSGVNIVSGGTDSHLMLVDLRPKGVTGRDAEHSLERAYMTCNKNGVPFDTAPFTITSGIRLGTPAGTTRGFKEAEFTRVGELIGEVV 396          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 66/163 (40.49%), Postives = 92/163 (56.44%), Query Frame = 1
Query:    7 PEGAVY----DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 480
            P GA+      +   ++ AVFP LQGGPHNH   A+AVAL +A  P F+ YA+ + ANA  L   L  +G+ LV+GGT+NHL+L DL   G+ G  V +  D   I +N N V F       P G+R+GTPA+TSRG+   +  QI  ++    T   +  +E
Sbjct:  238 PRGAMLMSTEQYAKALDKAVFPGLQGGPHNHTTAAIAVALLEAMQPEFRDYARNIVANAAVLAEELLARGFDLVSGGTDNHLILVDLTSKGVAGKPVARALDRAGIELNYNTVPFDPRKPFDPSGIRLGTPAVTSRGMGPAEMRQIAAWIDEVTTAVAKGDEE 400          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA3_COLP3 (Serine hydroxymethyltransferase 3 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 67/140 (47.86%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            D   KIN AVFP LQGGP  H + A AVAL +   P+F AY KQV +NA  L + L  +G  +VT GT+ HL+L DLRP GL GN  E+  +   IT NKN + F     +   G+R+GTPA TSRG    +FE IG+++
Sbjct:  256 DVAKKINSAVFPGLQGGPLMHVIAAKAVALGEVLEPSFGAYIKQVLSNARVLASTLQQRGCDIVTDGTDTHLMLVDLRPKGLKGNTTEESLERAGITCNKNGIPFDSEKPMVTSGIRLGTPAGTSRGFGNDEFELIGQWI 395          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_THELT (Serine hydroxymethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glyA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 468
            +N  VFP  QGGP  H + A AV  K+A +  F  Y KQV ANA  L N L+  G  +V+GGT+ HL+L DL PL +TG   EK  + C +TVNKN +  ++ S     G+RIGTPA+T+RG+ EK+ ++I E +   +   L+
Sbjct:  248 VNKTVFPGTQGGPLMHVIAAKAVCFKEAMSSGFVEYQKQVIANAKTLANELSSMGLRIVSGGTDTHLMLVDLTPLNVTGKAAEKALEKCGVTVNKNTIPNETRSPFVASGIRIGTPAVTTRGMREKEMKKIAELIFEVLKNVLD 391          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICFE (Serine hydroxymethyltransferase OS=Rickettsia felis GN=glyA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 71/166 (42.77%), Postives = 94/166 (56.63%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD 531
            KIN A+FP LQGGP  H + A AVA  +   P +K+Y KQV +NA AL + L  +GY ++TGGT+NH+VL DL   G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D
Sbjct:  250 KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIKQVISNAKALASSLQERGYDILTGGTDNHIVLVDLCKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNED 397          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_GEOLS (Serine hydroxymethyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 69/167 (41.32%), Postives = 91/167 (54.49%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT------LTLEIQKEYGKLLKDF 504
            ++   IN  +FP +QGGP  H + A AVA K+A  P FK Y +Q+  NA  L   L  KG+ L +GGT+NHL+L +     +TG   E+  D   ITVNKN V F   S     G+R+GTPA TS GL E + EQ+  F+  AV           IQK   +L+K F
Sbjct:  241 EYAKTINSQIFPGIQGGPLMHVIAAKAVAFKEALQPEFKTYQQQIVKNAAKLAECLMAKGFKLTSGGTDNHLMLINFTGTEITGKAAEEALDKAGITVNKNTVPFETRSPFVTSGIRVGTPACTSHGLKETEMEQVAGFIADAVANIGNDEALAAIQKRVNELMKKF 407          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_PARDP (Serine hydroxymethyltransferase OS=Paracoccus denitrificans (strain Pd 1222) GN=glyA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28
Identity = 79/188 (42.02%), Postives = 100/188 (53.19%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEA-LKADVEKFASSFDM 582
            D   KIN AVFP LQGGP  H + A AVA  +A  P FK YA QV ANA A+ + L   G  +V+GGT+NHL L DLRP G+TG   E      +IT NKN V F         G+R+G PA T+RG  E +F QI  ++   V   L    E G            N ++EA +KA+VE   + F +
Sbjct:  249 DIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALRPDFKDYAAQVVANARAMADELMKGGIDIVSGGTDNHLCLADLRPKGVTGKATEAALGRAHITCNKNGVPFDPEKPFVTSGIRLGAPAGTTRGFKEDEFRQIARWIVEVVD-GLAANGEEG------------NAEVEARVKAEVEALCARFPL 423          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GLOVI3.442e-2848.91Serine hydroxymethyltransferase OS=Gloeobacter vio... [more]
GLYA_GEOSM3.442e-2848.15Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_DESPS3.442e-2844.16Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA_CAUCR3.442e-2847.14Serine hydroxymethyltransferase OS=Caulobacter cre... [more]
GLYA_ACIC13.442e-2840.49Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA3_COLP33.442e-2847.86Serine hydroxymethyltransferase 3 OS=Colwellia psy... [more]
GLYA_THELT4.495e-2843.75Serine hydroxymethyltransferase OS=Thermotoga lett... [more]
GLYA_RICFE4.495e-2842.77Serine hydroxymethyltransferase OS=Rickettsia feli... [more]
GLYA_GEOLS4.495e-2841.32Serine hydroxymethyltransferase OS=Geobacter lovle... [more]
GLYA_PARDP5.871e-2842.02Serine hydroxymethyltransferase OS=Paracoccus deni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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