FC872848
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_GLOVI (Serine hydroxymethyltransferase OS=Gloeobacter violaceus GN=gylA PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28 Identity = 67/137 (48.91%), Postives = 86/137 (62.77%), Query Frame = 1 Query: 49 AVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 456 AVFP QGGP H + A AVA +A P FK YA V ANA AL LT +G +LV+GGT+NHL+L DLR + LTG + + L NIT NKN + F S G+R+G+PAMT+RGL +F +IGE + +T Sbjct: 254 AVFPGTQGGPLEHVIAAKAVAFGEALQPEFKTYAADVVANARALAERLTARGLTLVSGGTDNHLMLVDLRSVDLTGKQADLLMSDVNITTNKNTIPFDPQSPFVTSGLRLGSPAMTTRGLGTTEFGEIGEIIANRLT 390
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28 Identity = 65/135 (48.15%), Postives = 83/135 (61.48%), Query Frame = 1 Query: 40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441 +N +FP +QGGP H + A AVA K+A TP FK Y +Q+ NA AL LT +G+ L +GGT+NHL+L DL LTG E+ D ITVNKN + F S G+RIGTPA TS GL E + EQ+ F+ Sbjct: 246 LNSNIFPGIQGGPLMHVIAAKAVAFKEALTPEFKKYQEQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGFI 380
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28 Identity = 68/154 (44.16%), Postives = 93/154 (60.39%), Query Frame = 1 Query: 7 PEGAVY----DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453 P GA+ ++ I+ AVFP +QGGPH+ A+AVALK+AST +FK Y QV NA +L + L KG++LVTGGTENHL+L DL +TG + K D I +N N+V F P G+R+GT A+TSRG + + +G + R V Sbjct: 239 PRGAMIMCKAEYAKAIDKAVFPGMQGGPHDSTTAAIAVALKEASTDSFKKYTAQVVENAASLADVLIEKGFNLVTGGTENHLMLIDLSNKNITGKQAAKALDAAGIVLNCNSVPFDKRKPFDPSGIRLGTCAITSRGFAKAEMVILGNMMDRVV 392
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CAUCR (Serine hydroxymethyltransferase OS=Caulobacter crescentus GN=glyA PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28 Identity = 66/140 (47.14%), Postives = 88/140 (62.86%), Query Frame = 1 Query: 37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 453 K+N AVFP LQGGP H + A AVA +A P+FK YA+QV ANA AL L G ++V+GGT++HL+L DLRP G+TG E + +T NKN V F + G+R+GTPA T+RG E +F ++GE + V Sbjct: 257 KVNSAVFPGLQGGPLEHVIAAKAVAFGEALQPSFKDYARQVVANARALAEALLKSGVNIVSGGTDSHLMLVDLRPKGVTGRDAEHSLERAYMTCNKNGVPFDTAPFTITSGIRLGTPAGTTRGFKEAEFTRVGELIGEVV 396
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28 Identity = 66/163 (40.49%), Postives = 92/163 (56.44%), Query Frame = 1 Query: 7 PEGAVY----DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 480 P GA+ + ++ AVFP LQGGPHNH A+AVAL +A P F+ YA+ + ANA L L +G+ LV+GGT+NHL+L DL G+ G V + D I +N N V F P G+R+GTPA+TSRG+ + QI ++ T + +E Sbjct: 238 PRGAMLMSTEQYAKALDKAVFPGLQGGPHNHTTAAIAVALLEAMQPEFRDYARNIVANAAVLAEELLARGFDLVSGGTDNHLILVDLTSKGVAGKPVARALDRAGIELNYNTVPFDPRKPFDPSGIRLGTPAVTSRGMGPAEMRQIAAWIDEVTTAVAKGDEE 400
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA3_COLP3 (Serine hydroxymethyltransferase 3 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA3 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28 Identity = 67/140 (47.86%), Postives = 86/140 (61.43%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441 D KIN AVFP LQGGP H + A AVAL + P+F AY KQV +NA L + L +G +VT GT+ HL+L DLRP GL GN E+ + IT NKN + F + G+R+GTPA TSRG +FE IG+++ Sbjct: 256 DVAKKINSAVFPGLQGGPLMHVIAAKAVALGEVLEPSFGAYIKQVLSNARVLASTLQQRGCDIVTDGTDTHLMLVDLRPKGLKGNTTEESLERAGITCNKNGIPFDSEKPMVTSGIRLGTPAGTSRGFGNDEFELIGQWI 395
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_THELT (Serine hydroxymethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glyA PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28 Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = 1 Query: 40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 468 +N VFP QGGP H + A AV K+A + F Y KQV ANA L N L+ G +V+GGT+ HL+L DL PL +TG EK + C +TVNKN + ++ S G+RIGTPA+T+RG+ EK+ ++I E + + L+ Sbjct: 248 VNKTVFPGTQGGPLMHVIAAKAVCFKEAMSSGFVEYQKQVIANAKTLANELSSMGLRIVSGGTDTHLMLVDLTPLNVTGKAAEKALEKCGVTVNKNTIPNETRSPFVASGIRIGTPAVTTRGMREKEMKKIAELIFEVLKNVLD 391
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICFE (Serine hydroxymethyltransferase OS=Rickettsia felis GN=glyA PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28 Identity = 71/166 (42.77%), Postives = 94/166 (56.63%), Query Frame = 1 Query: 37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD 531 KIN A+FP LQGGP H + A AVA + P +K+Y KQV +NA AL + L +GY ++TGGT+NH+VL DL G+TG D IT NKNA+ F ++S G+R+GTPA T+RG EKDF +G ++ D GL NN+D Sbjct: 250 KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIKQVISNAKALASSLQERGYDILTGGTDNHIVLVDLCKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNED 397
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_GEOLS (Serine hydroxymethyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyA PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28 Identity = 69/167 (41.32%), Postives = 91/167 (54.49%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT------LTLEIQKEYGKLLKDF 504 ++ IN +FP +QGGP H + A AVA K+A P FK Y +Q+ NA L L KG+ L +GGT+NHL+L + +TG E+ D ITVNKN V F S G+R+GTPA TS GL E + EQ+ F+ AV IQK +L+K F Sbjct: 241 EYAKTINSQIFPGIQGGPLMHVIAAKAVAFKEALQPEFKTYQQQIVKNAAKLAECLMAKGFKLTSGGTDNHLMLINFTGTEITGKAAEEALDKAGITVNKNTVPFETRSPFVTSGIRVGTPACTSHGLKETEMEQVAGFIADAVANIGNDEALAAIQKRVNELMKKF 407
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_PARDP (Serine hydroxymethyltransferase OS=Paracoccus denitrificans (strain Pd 1222) GN=glyA PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28 Identity = 79/188 (42.02%), Postives = 100/188 (53.19%), Query Frame = 1 Query: 25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEA-LKADVEKFASSFDM 582 D KIN AVFP LQGGP H + A AVA +A P FK YA QV ANA A+ + L G +V+GGT+NHL L DLRP G+TG E +IT NKN V F G+R+G PA T+RG E +F QI ++ V L E G N ++EA +KA+VE + F + Sbjct: 249 DIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALRPDFKDYAAQVVANARAMADELMKGGIDIVSGGTDNHLCLADLRPKGVTGKATEAALGRAHITCNKNGVPFDPEKPFVTSGIRLGAPAGTTRGFKEDEFRQIARWIVEVVD-GLAANGEEG------------NAEVEARVKAEVEALCARFPL 423 The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bpback to top |