FC872860

Overview
NameFC872860
Unique NameFC872860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872860 vs. ExPASy Swiss-Prot
Match: PMM_ENCCU (Phosphomannomutase OS=Encephalitozoon cuniculi GN=SEC53 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.056e-61
Identity = 116/236 (49.15%), Postives = 159/236 (67.37%), Query Frame = 1
Query:   70 ARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEHLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRIGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDT 771
            AR +  + LFDVDGTL+  R     +M + +  LR+ V +G VGGSDL+K  E +G  +++ +DY F ENG+  +K+G L   + +   LG E  KEF NF L Y++D+D+PIKRG FIE+R  M+NISPIGRNCS+EER KF   DK    R KMV+ +R++F    L FSIGGQIS D FP+GWDKTYCLR++  +    ++FFGD T +GGND+EI+  +   G +V +P+DT
Sbjct:    2 ARDEKTIFLFDVDGTLSESRAKMPEKMGKMLESLRRKVRIGFVGGSDLAKQKEQVGDNILEIFDYGFPENGVSFYKNGTLESQEKIIDVLGEEFYKEFANFVLRYLSDIDLPIKRGNFIEYRNSMINISPIGRNCSREERMKFFELDKKEKFREKMVTAMRDRFKDSCLVFSIGGQISIDCFPKGWDKTYCLRHIKKEGVENVYFFGDMTMEGGNDYEIYNHKDVHGISVGNPDDT 237          
BLAST of FC872860 vs. ExPASy Swiss-Prot
Match: PMM_BABBO (Phosphomannomutase OS=Babesia bovis GN=PMM PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.105e-50
Identity = 101/230 (43.91%), Postives = 139/230 (60.43%), Query Frame = 1
Query:   88 LALFDVDGTLTAPRKAATPQMLEFMREL-RKVVTVGVVGGSDLSKISEHLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRIGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKF--AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPED 768
            + +FD+DGTLT P +     + + +R   RK   + VV GS   KI   L    IDE+DYVFSENG   +    L+ +  +   +   KL++ + F L YIADLDIP KRGTFIE R  ++NI P GRNCS  +R +F  YD IH++R K++ VL+ +F      L+F  GGQIS DV+P+ W K+  L ++   + IHFFGD T +GGND EI+     +GHTVT  +D
Sbjct:    5 MLIFDMDGTLTDPVQVINNDVKDILRRCKRKNFEIAVVSGSKYEKIKGQLNDGFIDEFDYVFSENGTQVYVKNVLVKSLDITEAIPETKLRKMVEFCLRYIADLDIPTKRGTFIEHRKSLINICPPGRNCSMVDRRRFVEYDSIHHVRQKLIQVLKSQFDSDDCPLSFVAGGQISIDVYPKAWSKSIALSHIGKCDVIHFFGDNTREGGNDFEIYNHPDVIGHTVTGYKD 234          
The following BLAST results are available for this feature:
BLAST of FC872860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMM_ENCCU2.056e-6149.15Phosphomannomutase OS=Encephalitozoon cuniculi GN=... [more]
PMM_BABBO8.105e-5043.91Phosphomannomutase OS=Babesia bovis GN=PMM PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AC10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872860 ID=FC872860; Name=FC872860; organism=Citrus clementina; type=EST; length=894bp
GGGGGCTCTACTCACGCTATTCATTCACTTCTATTCAGATAAATCTATAC
ATTTCAAACTCCAATGGCTGCTAGGAAGCAAGGTTTATTAGCTCTGTTTG
ATGTTGACGGAACTCTCACGGCTCCGAGAAAGGCGGCAACACCACAAATG
TTAGAGTTCATGCGGGAATTGAGAAAGGTTGTTACAGTTGGAGTCGTCGG
TGGATCTGATCTTTCTAAAATATCAGAGCACCTTGGGAAGACAGTTATTG
ATGAATACGATTATGTGTTTTCTGAGAATGGTCTTGTGGCTCATAAGGAT
GGGAAATTAATTGGCACACAGAGCTTGAAATCATTTCTTGGAGGGGAAAA
GCTCAAGGAATTCATAAATTTTACTCTTCATTACATTGCTGACTTGGACA
TTCCAATTAAAAGGGGAACTTTCATTGAATTCCGAATTGGGATGCTTAAT
ATTTCACCAATTGGGCGAAACTGCAGCCAAGAAGAAAGGGACAAGTTTGA
GAGGTATGACAAGATTCACAATATACGGCCAAAAATGGTGTCTGTGCTTC
GGGAGAAGTTTGCTCACCTTAACTTGACATTTTCAATTGGAGGACAGATA
AGCTTTGATGTGTTTCCCCAGGGATGGGACAAGACATACTGCTTGAGATA
CCTTGATGACTTCAATGAAATTCACTTTTTTGGGGACAAAACTTACAAGG
GAGGGAATGATCATGAAATTTTTGAATCCGAGCGAACAGTGGGTCACACA
GTTACCAGCCCTGAGGATACTATGGAATAGTGTAAGGCTCTCTTCCTGGC
TAAACCGTGAATTTGGGAGAAGTTATAGTAAGTCTACAAACACAAGAGAA
TAATTCGTATTTCTAATGCGAGCAATTCATTGTAATTTTATTTG
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