FC872950

Overview
NameFC872950
Unique NameFC872950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1284 contig Ccv1_Contig1284:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_PYRAB (50S ribosomal protein L7Ae OS=Pyrococcus abyssi GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  153 KKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 473
            K+L++  L  V +A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      +L +E   K++
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR 119          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_THEGJ (50S ribosomal protein L7Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  153 KKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 473
            ++L++  L  V +A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      EL ++   K+K
Sbjct:   13 QELAEKALEAVEIARDTGRIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGLEVAAASVAIIEPGKARELVEDIAMKVK 119          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_METJA (50S ribosomal protein L7Ae OS=Methanocaldococcus jannaschii GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  180 LVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGEL 446
            L+   A+ + +K+G  EV K++ RG   L +IA ++ P +V+ H+P LCEE  IPY YVASK+DL  A   +     V ++ +    EL
Sbjct:   17 LLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEEL 105          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_SULTO (50S ribosomal protein L7Ae OS=Sulfolobus tokodaii GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = 3
Query:  159 LSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKELAS 518
            L+   L  VR A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LCEE  IPY+YV SK+ L  A        C L +   +   +   E   L  +    VE++K  AS
Sbjct:   15 LANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYVPSKKALGEA--------CGLQVAAASAAIIDPGEAKDLLDEIVKRVEELKGKAS 126          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_META3 (50S ribosomal protein L7Ae OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  210 LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 428
            +K+G  EV K++ RG   L V+A ++ P +++ H+PI+CEE  IPY Y+A+KEDL  A   +  T  V ++ +
Sbjct:   27 VKKGANEVTKAVERGTAKLVVLAKDVQPEEIVAHIPIICEEKGIPYTYIATKEDLGKAIGLEVSTAAVAIIAE 99          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_SULIY (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  117 VSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 422
            +S A   K    + L+   L  VR A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_SULIN (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  117 VSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 422
            +S A   K    + L+   L  VR A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_SULIM (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  117 VSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 422
            +S A   K    + L+   L  VR A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_SULIL (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  117 VSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 422
            +S A   K    + L+   L  VR A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_SULIK (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  117 VSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 422
            +S A   K    + L+   L  VR A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
The following BLAST results are available for this feature:
BLAST of FC872950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RL7A_PYRAB9.894e-1231.7850S ribosomal protein L7Ae OS=Pyrococcus abyssi GN... [more]
RL7A_THEGJ1.292e-1131.7850S ribosomal protein L7Ae OS=Thermococcus gammato... [more]
RL7A_METJA1.292e-1138.2050S ribosomal protein L7Ae OS=Methanocaldococcus j... [more]
RL7A_SULTO1.688e-1134.1750S ribosomal protein L7Ae OS=Sulfolobus tokodaii ... [more]
RL7A_META31.688e-1139.7350S ribosomal protein L7Ae OS=Methanococcus aeolic... [more]
RL7A_SULIY2.204e-1135.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIN2.204e-1135.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIM2.204e-1135.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIL2.204e-1135.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIK2.204e-1135.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872950 ID=FC872950; Name=FC872950; organism=Citrus clementina; type=EST; length=700bp
TGAAAAATAAAACTCAAATCTCTGTTTCGTGCGATTCATTGATAACTGAA
CAAATAAAATGGGAAGCGACAGCTTAACCAGAGAGAACCCCTCATAAATA
TGAGAAGAAGAACATTGTTAGTCTTGCTCCCATTGCTAAGCCTCTAGCTG
GAAAGAAGCTCTCCAAAGGAACCCTCGGGCTTGTCCGTCTAGCTGCTGAG
CACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTATCCGCCG
TGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAATTGATG
TCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATATTCCCTACATT
TATGTTGCTTCAAAAGAGGATCTTGCAAATGCAGGTGCCACAAAGAGGCC
AACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAACTAGGAC
AAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGTAGAGGAT
GTGAAGGAACTGGCATCCTCTCTTTTCTGATGAACTAGACTTAAAGCCAA
CAAAGATGATTGTGCTTACAGATATGTTTGATTTCGAACCTTCCCTTTCT
AGCTGAGTAATGTACTCTAGTTTTGTCGAATGTAAAATGCAGTTTGCCTC
TGTTGCATGAGATGGTTGGTTTTCATGTCTCATATGTGGGTATATTGCTT
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