FC872959

Overview
NameFC872959
Unique NameFC872959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872959_ssr22 microsatellite FC872959_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig632 contig Ccv1_Contig632:28..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_ARCFU (30S ribosomal protein S10P OS=Archaeoglobus fulgidus GN=rps10p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 36/98 (36.73%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K RI LS  N + L+++C+ +   A    + + GPV +PT+ + +  RK+P GEG+ TWD +E+RVHKR+ID+ +    ++QI  I +   V +E+ +
Sbjct:    7 KARIKLSGLNPRELDRICSQIKEIANKTGVELSGPVPLPTRRMVVPVRKAPDGEGSETWDHWEMRVHKRLIDISADERALRQIMRIQVPRDVNIEIVL 104          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METBU (30S ribosomal protein S10P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps10p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.567e-15
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K RI LS  +  NL+ VC  +   A    + + GPV +PTK L +  RKSP G+GT TWD +E+RVHKR+ID+ +    ++Q+  I +   + +E+ +
Sbjct:    4 KARIRLSGTSPVNLDGVCDQVKAIANRTGVSISGPVPLPTKKLVVPVRKSPSGDGTATWDHWEMRVHKRLIDIAADERALRQLMRIQVPKDISIEIVL 101          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_NATPD (30S ribosomal protein S10P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps10p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.577e-15
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 455
            + + R+ L+    ++L+ +C D+   A    + + GPV +PTK L I  RKSP GEGT TW+ +E+RVHKR+ID+ +    ++Q+  I +   V +E+ + D
Sbjct:    1 MQQARVRLAGTAPEDLDDICDDVREIADKTGVTLSGPVPLPTKTLEIPARKSPDGEGTATWEHWEMRVHKRLIDIDADERALRQLMRIQVPNDVSIEIVLED 102          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METTH (30S ribosomal protein S10P OS=Methanobacterium thermoautotrophicum GN=rps10p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.577e-15
Identity = 35/100 (35.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            +HK RI L+  + + L  VC  L + A+   + + GP+ +PTK L + TRKSP GEGT TW+++E+R+HKR++ + +    ++Q+  + +   V +E+ +
Sbjct:    1 MHKARIKLTGTDPEKLAYVCDQLKKIAERTGVDMSGPIPLPTKRLVVPTRKSPDGEGTATWEKWEMRIHKRLVGIEADERAMRQVMKVNVPDNVSIEIEL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METVS (30S ribosomal protein S10P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps10p PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.120e-14
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LSS   + L+ VC  +   A+   + + GP+ +PTK L ITTRKS  GEG++++DR+ +RVHKRVID+ +    +K I  + I   V++E+ +
Sbjct:    1 MQKARIKLSSTKHEELDSVCNQIKAIAEKTGVDMAGPIPLPTKSLKITTRKSTDGEGSSSFDRWTMRVHKRVIDIEADERTMKHIMKVRIPDAVQIEIEL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METTP (30S ribosomal protein S10P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps10p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.120e-14
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LS  N   L+++C  +   A+   + + GP+ +PTK L +  RKSP GEG+ TWD +E+RVHKR+IDL +    ++Q+  I +   V +E+ +
Sbjct:    1 MQKARIRLSGTNPATLDEICNQVRGIAQRTGVHMAGPIPLPTKRLVVPCRKSPDGEGSATWDHWEMRVHKRLIDLDADERALRQLMRIQVPKNVNIEIVL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METKA (30S ribosomal protein S10P OS=Methanopyrus kandleri GN=rps10p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.463e-14
Identity = 37/96 (38.54%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEV 443
            ++R+ LSS +   LE+VC  + +  ++   ++ GP+ +PTK L + TRKSP GEG  TWD++E+R+HKR+ID+      ++++  I I   V VE+
Sbjct:    4 EVRLRLSSTDHYKLEEVCERIKKVVEETGAQMSGPIPLPTKRLLVPTRKSPDGEGKATWDKWEMRIHKRLIDIKGDERTIRRLMRIHIPEEVHVEI 99          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_KORCO (30S ribosomal protein S10P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps10p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.463e-14
Identity = 41/99 (41.41%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  159 IRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD--VVKQITSITIEPGVEVEVTI 449
            +RI L S N ++LEKV       A    +RVKGP+ +PTK L +T  ++P GEGTN +D++ELR+HKR+ID+  +PD   ++ I  IT+   V++ + +
Sbjct:    5 LRIELVSVNPESLEKVSRMFKEIADKMGVRVKGPIPLPTKRLRVTALRNPSGEGTNRYDKYELRIHKRIIDI-PNPDERYIRSIMGITLPDDVKISIVL 102          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METMP (30S ribosomal protein S10P OS=Methanococcus maripaludis GN=rps10p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.257e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LSS     L+ VC  +   A+   + + GP+ +PTK L +TTRKS  GEG++++DR+ +RVHKRVID+ +    +K I  + I   V++E+ +
Sbjct:    1 MQKARIKLSSTQHTELDGVCDQIKAIAEKTGVDMSGPIPLPTKALKVTTRKSTDGEGSSSFDRWTMRVHKRVIDIEADERTMKHIMKVRIPDTVQIEIEL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METM5 (30S ribosomal protein S10P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps10p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.257e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LSS     L+ VC  +   A+   + + GP+ +PTK L +TTRKS  GEG++++DR+ +RVHKRVID+ +    +K I  + I   V++E+ +
Sbjct:    1 MQKARIKLSSTQHTELDGVCNQIKAIAEKTGVDMAGPIPLPTKALKVTTRKSTDGEGSSSFDRWTMRVHKRVIDIEADERTMKHIMKVRIPDTVQIEIEL 100          
The following BLAST results are available for this feature:
BLAST of FC872959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS10_ARCFU5.028e-1536.7330S ribosomal protein S10P OS=Archaeoglobus fulgid... [more]
RS10_METBU6.567e-1538.7830S ribosomal protein S10P OS=Methanococcoides bur... [more]
RS10_NATPD8.577e-1536.2730S ribosomal protein S10P OS=Natronomonas pharaon... [more]
RS10_METTH8.577e-1535.0030S ribosomal protein S10P OS=Methanobacterium the... [more]
RS10_METVS1.120e-1440.0030S ribosomal protein S10P OS=Methanococcus vannie... [more]
RS10_METTP1.120e-1438.0030S ribosomal protein S10P OS=Methanosaeta thermop... [more]
RS10_METKA1.463e-1438.5430S ribosomal protein S10P OS=Methanopyrus kandler... [more]
RS10_KORCO1.463e-1441.4130S ribosomal protein S10P OS=Korarchaeum cryptofi... [more]
RS10_METMP4.257e-1439.0030S ribosomal protein S10P OS=Methanococcus maripa... [more]
RS10_METM54.257e-1439.0030S ribosomal protein S10P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872959 ID=FC872959; Name=FC872959; organism=Citrus clementina; type=EST; length=765bp
AAGAGGCAGCACATGCAGCAACAGCAGCAGCAGCTCTCACTCTTCCGGTC
TCTCGAAATCCTATAAGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTA
TGCAGCAATGAAGCCCACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGA
TTCATAAGATCAGAATCACACTTTCCTCCAAGAATGTTAAAAATCTTGAG
AAAGTCTGTACGGATTTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGT
CAAGGGTCCAGTGAGGATGCCTACCAAGGTTCTTCACATCACCACTAGGA
AGTCCCCTTGTGGTGAAGGAACCAACACTTGGGACAGATTTGAGCTCCGT
GTTCACAAGAGAGTTATTGATCTCTTTAGCTCCCCTGATGTCGTGAAGCA
GATCACTTCCATTACCATTGAACCTGGCGTGGAAGTGGAGGTTACCATTG
CCGACTCTTAAATGTCTGGCACTTTATTTTTGTGTCCATTTAGCTTTTAG
TGAAATCAGAAGTAATCTTCCCTCATGACACTGTTTGCTTGGAAGAATTT
GTCAAGAATTTAAGACTGAACAATCGATGTAGGGTTGATGTTAGTTTGTT
TTTTGCCATACTATTTTGCAAGTTAAAAATTATGTTTTGGGTTATGTGGA
GAGGGATTTTGTTTACTGTTCATTTTATATTAAGCAATGTTTGGATATTT
GTTTTGAATCTCTAATAGACGTTAAATATCATATGTTTTCCCCCAAAAAA
AAAAAAAAAAAAAAA
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