FC872964

Overview
NameFC872964
Unique NameFC872964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length464
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10914 contig Ccv1_Contig10914:689..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.503e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 7.503e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 7.503e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.503e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.503e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.503e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.503e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.503e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.503e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.503e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC872964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBIQ_HUMAN7.503e-3596.05Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE7.503e-3596.05Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO7.503e-3596.05Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA7.503e-3596.05Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_DROME7.503e-3596.05Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR7.503e-3596.05Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK7.503e-3596.05Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA7.503e-3596.05Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO7.503e-3596.05Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA7.503e-3596.05Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DH07FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872964 ID=FC872964; Name=FC872964; organism=Citrus clementina; type=EST; length=464bp
ACATCCAGAAAGAGTCAACTCTTCACCTTGTCCTCCGTCTCCGTGGAGGC
ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACTATTACTCTGGAGGT
GGAGAGTTCTGATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGG
AAGGGATTCCACCAGATCAGCAGAGGCTCATCTTCGCTGGGAAGCAGCTA
GAGGACGGCCGTACCCTTGCTGATTATAACATCCAAAAGGAGTCCACCCT
CCATCTTGTCCTCCGTCTTCGTGGTGGTGAATGCTGAGATGGTTGTTAAG
TTGTGCTTGTGTCTTTGTTTGGTTGGGTTATTGTTGGTTCCGTCATGAAT
TAGTTTGTTGCTTTTGGGTTATGGTGCTCTGTTTCCGTCTTTTGTTGAAC
AAGTTTTATGCAGTGGTGAATAAAAAATTGATTTAAATAAAAAAAAAAAA
AAAAAAAAAAAAAA
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