FC872964

Overview
NameFC872964
Unique NameFC872964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length464
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10914 contig Ccv1_Contig10914:689..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.088e-17
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.573e-16
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of FC872964 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.988e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   51 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
The following BLAST results are available for this feature:
BLAST of FC872964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
NEDD8_DICDI1.088e-1753.95NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
RUB1_YEAST4.573e-1652.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
ANUB1_HUMAN1.988e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DH07FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872964 ID=FC872964; Name=FC872964; organism=Citrus clementina; type=EST; length=464bp
ACATCCAGAAAGAGTCAACTCTTCACCTTGTCCTCCGTCTCCGTGGAGGC
ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACTATTACTCTGGAGGT
GGAGAGTTCTGATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGG
AAGGGATTCCACCAGATCAGCAGAGGCTCATCTTCGCTGGGAAGCAGCTA
GAGGACGGCCGTACCCTTGCTGATTATAACATCCAAAAGGAGTCCACCCT
CCATCTTGTCCTCCGTCTTCGTGGTGGTGAATGCTGAGATGGTTGTTAAG
TTGTGCTTGTGTCTTTGTTTGGTTGGGTTATTGTTGGTTCCGTCATGAAT
TAGTTTGTTGCTTTTGGGTTATGGTGCTCTGTTTCCGTCTTTTGTTGAAC
AAGTTTTATGCAGTGGTGAATAAAAAATTGATTTAAATAAAAAAAAAAAA
AAAAAAAAAAAAAA
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