FC873025

Overview
NameFC873025
Unique NameFC873025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14949 contig Ccv1_Contig14949:64..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.073e-34
Identity = 69/144 (47.92%), Postives = 100/144 (69.44%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            RRKTR V VG+V +G  +PI +Q+M  +DT D  G+V++++ +   G ++VR+TV  + +AD    I+  L +    +PLVADIHF PSVA++  E  +K+R+NPGNFAD++ +F   +YTD EY +ELE I EVFSPLV +CK
Sbjct:   14 RRKTREVKVGDVKVGGNNPIVIQSMINSDTTDTQGSVKQILELERAGCEIVRLTVPSQADADNLPSIRQELKKAGSKVPLVADIHFTPSVAMKAVEYVEKVRINPGNFADKK-KFAVRDYTDLEYNQELERISEVFSPLVLRCK 156          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33
Identity = 68/156 (43.59%), Postives = 103/156 (66.03%), Query Frame = 1
Query:  286 RQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            +  YC S ++  RR TR VMVGNV +G  +PIR+Q+M T+DT+D    V+E + +A+ G +++R+T Q K  A     I   L     ++PLVADIHF P  A+  A+  +KIR+NPGNF D++ +F+  EY+D EY++EL+ ++E F+PLV  C+
Sbjct:    2 QSSYCPSPYRYTRRVTREVMVGNVGVGGSNPIRIQSMLTSDTRDTDACVKEALELAEAGCEIIRLTAQTKAYAANLENIARELRAAGCHVPLVADIHFKPDAAMEAAKWVEKIRINPGNFVDKK-KFEVREYSDAEYREELDRLKEEFTPLVLFCR 156          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispG PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.349e-33
Identity = 68/144 (47.22%), Postives = 100/144 (69.44%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            RRKTR V VG+V +G  +PI +Q+M  +DT D  G+V++++ +   G ++VR+TV  + +AD    I+  L +    +PLVADIHF PSVA++  E  +K+R+NPGNFAD++ +F   +YTD +Y +ELE I EVFSPLV +CK
Sbjct:   14 RRKTREVKVGDVKVGGNNPIVIQSMINSDTTDTQGSVKQILELERAGCEIVRLTVPSQADADNLPSIRQELKKAGSKVPLVADIHFTPSVAMKAVEYVEKVRINPGNFADKK-KFAVRDYTDLKYNQELERISEVFSPLVLRCK 156          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.068e-33
Identity = 69/144 (47.92%), Postives = 98/144 (68.06%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            RR+TR V VG+V IG  +PI +Q+M  +DT D  GTV++++ +   G ++VR TV  + +AD    I+  L +    IPLVADIHF PSVA++  E  +K+R+NPGNFAD++ +F   +YTD EY +ELE I  +FSPLV +CK
Sbjct:   14 RRQTREVKVGDVKIGGNNPIVIQSMINSDTTDTKGTVKQILELERTGCEIVRFTVPSQVDADNLPSIRQELKKAGSKIPLVADIHFTPSVAMKAVEYVEKVRINPGNFADKK-KFAVRDYTDSEYDEELERISAIFSPLVLRCK 156          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.834e-33
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            RR+TR V VG+V IG  +PI +Q+M  +DT D  GTV++++ +   G ++VR TV  + +AD    I+  L +    IPLVADIHF PSVA++  E  +K+R+NPGNFAD++ +F   +YTD EY +ELE I   FSPLV +CK
Sbjct:   14 RRQTREVKVGDVKIGGNNPIVIQSMINSDTTDTKGTVKQILELERTGCEIVRFTVPSQVDADNLPSIRQELKKAGSKIPLVADIHFTPSVAMKAVEYVEKVRINPGNFADKK-KFAVRDYTDSEYDEELERISATFSPLVLRCK 156          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_BACTN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides thetaiotaomicron GN=ispG PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.861e-30
Identity = 63/144 (43.75%), Postives = 90/144 (62.50%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            RR+T  V +G V +G  +PIR+Q+MT   T D    VE+  RI D G + VR+T QG +EA+    I   L  + Y +PLVAD+HF P VA   A+  +K+R+NPGN+ D    F++LEYTD+EY +E++ I + F P +  CK
Sbjct:    8 RRETSEVNIGAVPLGGPNPIRIQSMTNTSTMDTEACVEQAKRIVDAGGEYVRLTTQGVKEAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQYAEKVRINPGNYVDAARTFKKLEYTDEEYAQEIQKIHDRFVPFLNICK 151          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_BACFR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis GN=ispG PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.175e-30
Identity = 64/144 (44.44%), Postives = 89/144 (61.81%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            RR+T  V +G V +G  +PIR+Q+MT   T+D    V +  RI D G + VR+T QG +EA+    I   L    Y +PLVAD+HF+P VA   A+  +K+R+NPGN+ D    F+QLEYTD+EY  EL+ I + F P +  CK
Sbjct:    8 RRETSEVNIGAVPLGGPNPIRIQSMTNTPTQDTEACVAQAKRIVDAGGEYVRLTTQGVKEAENLMNINIGLRSTGYMVPLVADVHFSPKVADVAAQYAEKVRINPGNYVDPGRTFKQLEYTDEEYAAELQKIRDRFVPFLNICK 151          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_BACFN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ispG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.072e-30
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            RR+T  V +G V +G  +PIR+Q+MT   T+D    V +  RI D G + VR+T QG +EA+    I   L    Y +PLVAD+HF P VA   A+  +K+R+NPGN+ D    F+QLEYTD+EY  EL+ I + F P +  CK
Sbjct:    8 RRETSEVNIGAVPLGGPNPIRIQSMTNTPTQDTEACVAQAKRIVDAGGEYVRLTTQGVKEAENLMNINIGLRSTGYMVPLVADVHFNPKVADVAAQYAEKVRINPGNYVDPGRTFKQLEYTDEEYAAELQKIRDRFVPFLNICK 151          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_PARD8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ispG PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.575e-29
Identity = 63/144 (43.75%), Postives = 87/144 (60.42%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            RRK+    +G+  +G E+PIR+Q+M    T D    V + +R+ + GA+ VR T QG+REA    EI+  L ++ Y  PLVADIHF P  A   A   +K+R+NPGN+ D+   F  LEYTD+EY  E+E I E F P +  CK
Sbjct:    8 RRKSSVAQIGDTPMGGENPIRIQSMANVSTMDTEAAVAQAIRMIEAGAEYVRFTAQGEREARNLGEIRKQLNEQGYTTPLVADIHFNPRAADAAAGEVEKVRINPGNYVDKVKTFSHLEYTDEEYAAEIEKIRERFVPFLNICK 151          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_BACV8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispG PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.687e-29
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            RR++  V +G   +G  +PIR+Q+MT   T D    VE+  RI D G + VR+T QG REA+    I   L  + Y+ PLVAD+HF P VA   A+  +K+R+NPGN+ D    FQ+LEYTD+EY +E+E I   F P +  CK
Sbjct:    8 RRESSEVNIGATPLGGNNPIRIQSMTNTVTMDTEACVEQAKRIIDAGGEYVRLTTQGVREAENLKNINIGLRSQGYDTPLVADVHFNPKVADVAAQYAEKVRINPGNYVDPGRTFQKLEYTDEEYAQEIEKIRARFIPFLNICK 151          
The following BLAST results are available for this feature:
BLAST of FC873025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_LEPIN8.073e-3447.924-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AKKM81.798e-3343.594-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIC2.349e-3347.224-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBL3.068e-3347.924-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBJ6.834e-3347.924-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACTN1.861e-3043.754-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFR3.175e-3044.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFN7.072e-3044.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PARD81.575e-2943.754-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACV82.687e-2944.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2BF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873025 ID=FC873025; Name=FC873025; organism=Citrus clementina; type=EST; length=755bp
CACATTTCTCTCTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTA
GGCGTAGTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAGGAAGCCCCCTATTAGTTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGAATGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCAGCTAGAGTACACAGACGATGAGTATCAGA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCATTGGTTGAGAAATGT
AAAAA
back to top