FC873025
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_SALTO (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispG PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11 Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 642 RR +R +MVG+V +G P+ VQ+MTT T DV T++++ + G +VR+ V + + A + + +P++ADIHF P E +RVNPGN Sbjct: 19 RRASRQIMVGSVPVGGGAPVSVQSMTTTLTADVNATLQQIAELTAAGCQIVRVAVPSQDDVAAL-----PAIARKSQLPVIADIHFQPRYVFAAIEAGCAAVRVNPGN 121
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_LARHH (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispG PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11 Identity = 42/111 (37.84%), Postives = 54/111 (48.65%), Query Frame = 1 Query: 322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR----VAECFDKIRVNPGN 642 RR R +G+V +G P+ VQ+MT DT D A T +V + G+++VRITV A EI+ L PLV D HF LR A K R+NPGN Sbjct: 8 RRVCRQARIGHVLMGGTAPVVVQSMTNTDTADAAATALQVFDLWQAGSEVVRITVNSPEAAARVAEIRLRLDDMGCTAPLVGDFHFNGDRLLRDYPDCARALAKYRINPGN 118
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_THELT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=ispG PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.527e-11 Identity = 32/105 (30.48%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 331 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VAECFDKIRVNPGN 642 ++T+ + N+ +G +P+ +Q+MT T++V T+ ++ + G ++VR++V A + L+++ IP++ADIHF +A+ + DKIR+NPGN Sbjct: 2 SKTLKIANIFLGGNNPVVIQSMTNTKTQEVEKTIRQINDLMSAGCEMVRVSVPDLESAQSI-----KLIKQKVRIPIIADIHFDHKLAIEAIKSGADKIRINPGN 101
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_MYCGA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Mycoplasma gallisepticum GN=ispG PE=3 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11 Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 1 Query: 322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADR 654 R KT+ V VG+V IG ++ I +Q+MT TK V +++E+ + +GADLVRI V + A I+ + Q P++ADIHF P A+ + KIR+NPGN + Sbjct: 4 RTKTKKVFVGDVQIGGQNKIVLQSMTIAKTKHVKKSLKEINDLVKEGADLVRIAVFDDADKRA---IRKVVDQS--PCPIIADIHFNPDYAIAAIKAGCKKIRLNPGNIKSK 110 The following BLAST results are available for this feature:
BLAST of FC873025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 424
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873025 ID=FC873025; Name=FC873025; organism=Citrus clementina; type=EST; length=755bpback to top |