FC873025

Overview
NameFC873025
Unique NameFC873025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14949 contig Ccv1_Contig14949:64..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_SALTO (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 642
            RR +R +MVG+V +G   P+ VQ+MTT  T DV  T++++  +   G  +VR+ V  + +  A        + +   +P++ADIHF P       E     +RVNPGN
Sbjct:   19 RRASRQIMVGSVPVGGGAPVSVQSMTTTLTADVNATLQQIAELTAAGCQIVRVAVPSQDDVAAL-----PAIARKSQLPVIADIHFQPRYVFAAIEAGCAAVRVNPGN 121          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_LARHH (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11
Identity = 42/111 (37.84%), Postives = 54/111 (48.65%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR----VAECFDKIRVNPGN 642
            RR  R   +G+V +G   P+ VQ+MT  DT D A T  +V  +   G+++VRITV     A    EI+  L       PLV D HF     LR     A    K R+NPGN
Sbjct:    8 RRVCRQARIGHVLMGGTAPVVVQSMTNTDTADAAATALQVFDLWQAGSEVVRITVNSPEAAARVAEIRLRLDDMGCTAPLVGDFHFNGDRLLRDYPDCARALAKYRINPGN 118          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_THELT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=ispG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.527e-11
Identity = 32/105 (30.48%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  331 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VAECFDKIRVNPGN 642
            ++T+ + N+ +G  +P+ +Q+MT   T++V  T+ ++  +   G ++VR++V     A +       L+++   IP++ADIHF   +A+  +    DKIR+NPGN
Sbjct:    2 SKTLKIANIFLGGNNPVVIQSMTNTKTQEVEKTIRQINDLMSAGCEMVRVSVPDLESAQSI-----KLIKQKVRIPIIADIHFDHKLAIEAIKSGADKIRINPGN 101          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_MYCGA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Mycoplasma gallisepticum GN=ispG PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADR 654
            R KT+ V VG+V IG ++ I +Q+MT   TK V  +++E+  +  +GADLVRI V    +  A   I+  + Q     P++ADIHF P  A+   +    KIR+NPGN   +
Sbjct:    4 RTKTKKVFVGDVQIGGQNKIVLQSMTIAKTKHVKKSLKEINDLVKEGADLVRIAVFDDADKRA---IRKVVDQS--PCPIIADIHFNPDYAIAAIKAGCKKIRLNPGNIKSK 110          
The following BLAST results are available for this feature:
BLAST of FC873025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_SALTO1.134e-1134.264-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LARHH1.935e-1137.844-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THELT2.527e-1130.484-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MYCGA3.300e-1138.394-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873025 ID=FC873025; Name=FC873025; organism=Citrus clementina; type=EST; length=755bp
CACATTTCTCTCTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTA
GGCGTAGTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAGGAAGCCCCCTATTAGTTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGAATGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCAGCTAGAGTACACAGACGATGAGTATCAGA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCATTGGTTGAGAAATGT
AAAAA
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