FC873039

Overview
NameFC873039
Unique NameFC873039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length859
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC_DICDI (Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.092e-32
Identity = 62/102 (60.78%), Postives = 85/102 (83.33%), Query Frame = 3
Query:  543 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 848
            SFW++Q ++I K  DFK H LPLARIKKIMK+D+DV  IS+EAP++FA+ACE+ ILE+T RSW HTE NKRRTLQ+ DI  +++R + FDFL+D++PR+++K
Sbjct:  251 SFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDMLPRDEIK 352          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: HAP5_YEAST (Transcriptional activator HAP5 OS=Saccharomyces cerevisiae GN=HAP5 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = 3
Query:  546 FWANQYQEIEKVN--------DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDL 845
            +W     EIE  N        DFK+HSLP ARI+K+MK DEDV+MISAEAP+IFA+ACE+FI ELT+R+W   E NKRRTLQK DIA A+ ++D+FDFL+D+VPR  L
Sbjct:  133 YWQELINEIESTNEPGSEHQDDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVAERNKRRTLQKADIAEALQKSDMFDFLIDVVPRRPL 240          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 61/100 (61.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:  543 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRED 842
            ++W  Q   +E V+DFKN  LPLARIKKIMKAD DV M+SAEAP+IFA+ACEMFI++LT+RSW   EENKR TLQK+DI+ A+  +  +DFL+D+VP+++
Sbjct:   38 NYWIEQ---METVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDE 134          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC8_ARATH (Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana GN=NFYC8 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.898e-26
Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 3
Query:  543 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 824
            SFW+   +E+E   DFKNH LP+ RIKKIMK D DV MI++EAP++ ++ACEMFI++LT+RSW H +E+KR TLQK+++ AA+ +T IFDFL+D
Sbjct:   20 SFWS---KEMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLD 110          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC5_ARATH (Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana GN=NFYC5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.338e-22
Identity = 49/100 (49.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:  543 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRED 842
            SFW+   + +E   + KNH  P++RIK+IMK D DV MI+AEAP + ++ACEMF+++LT+RSW H +E+ R T++K+D+ A +++T IFDFL D VP+++
Sbjct:   20 SFWS---KGMEGDLNVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDVPKDE 116          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: HAP5_SCHPO (Transcriptional activator hap5 OS=Schizosaccharomyces pombe GN=hap5 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.671e-22
Identity = 49/102 (48.04%), Postives = 77/102 (75.49%), Query Frame = 3
Query:  546 FWANQYQEIEKVND-FKNHSLPLARIKKIMKADEDVR--MISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRED 842
            +W      +E  +   K   LPLARIKK+MK D+DV+  MISAEAP +FA+  E+FI ELT+R+W H ++N+RRTLQ++DIA A+++++++DFL+DI+ +++
Sbjct:   89 YWQKTIDTLEHDDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISKDN 190          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC7_ARATH (Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana GN=NFYC7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.587e-21
Identity = 51/105 (48.57%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  543 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQ------KNDIAAAITRTDIFDFLVDIVPRE 839
            ++W  Q   +    D K+H+ PL RIKKIMK++ +V M++AEAPV+ ++ACEM IL+LT+RSW HT E  R+TL+      ++DI+AA TR+  F FL D+VPR+
Sbjct:   47 NYWIAQ---MGNATDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRSDTLTRSDISAATTRSFKFTFLGDVVPRD 148          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYCA_ARATH (Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana GN=NFYC10 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.453e-18
Identity = 43/97 (44.33%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  546 FWANQYQEIEKVNDFKNHS-LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 833
            FW NQ    E++ +F   + LPL+R++KI+K+D +V+ IS + P +F++ACE FILE+TLR+W HT+   R T+++ DI  A+  +  +DFL+D VP
Sbjct:   51 FWNNQR---EQLGNFAGQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQSCTRETIRRCDIFQAVKNSGTYDFLIDRVP 144          
The following BLAST results are available for this feature:
BLAST of FC873039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC_DICDI1.092e-3260.78Nuclear transcription factor Y subunit gamma OS=Di... [more]
HAP5_YEAST4.587e-3160.19Transcriptional activator HAP5 OS=Saccharomyces ce... [more]
NFYC6_ARATH1.130e-2961.00Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
NFYC8_ARATH9.898e-2658.51Nuclear transcription factor Y subunit C-8 OS=Arab... [more]
NFYC5_ARATH1.338e-2249.00Nuclear transcription factor Y subunit C-5 OS=Arab... [more]
HAP5_SCHPO8.671e-2248.04Transcriptional activator hap5 OS=Schizosaccharomy... [more]
NFYC7_ARATH9.587e-2148.57Nuclear transcription factor Y subunit C-7 OS=Arab... [more]
NFYCA_ARATH4.453e-1844.33Nuclear transcription factor Y subunit C-10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BH06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873039 ID=FC873039; Name=FC873039; organism=Citrus clementina; type=EST; length=859bp
AAAAGAAAGAGAAAAAAAAAAAATCCCTTGATTCTCTCAAAACCCTAAAA
GGGGAAGGTTATATTTTCCAAAATCGGATCTTTTTATTTCATTCTCTCAC
TGTACGGTATTAATAATAACCCAGAAAAAGAGAAAAAATAAAAAGCTTTT
TATTCATCAGTGCCTATTAGATCTCTTACCAAATAAAAGGAAAAAAAAAT
CCCTAAAAAGATTTTCTTTTTCTTTCTTTTCAGGGGTTTCAATCTGGGTG
AAGGAGGAAAAAGCAAAAGAATCAGAAAAGTTGGATTAGTATGGATCGGC
AAGGACACGGTGGACAACCCACATCTATGGGGTTGGTTGGTAGTGGAGCT
CAAGTGCCATACGGCACAAACCCGTATCAGCAGAATCAAATGGCTGGCGG
TCCCAACCCTGGCCCAGCTGTCACATCAGTCGGGGCAATTCAATCTACTA
GTCAGCCAGGAGGTGCTCAGCTTGCACAACACCAACTTGCCTATCAACAA
ATTCATCACCAGCAGCAACAGCAGCTTCAGCAACAACTCCAGTCTTTTTG
GGCCAATCAGTACCAAGAAATTGAAAAGGTTAATGATTTCAAGAATCATA
GCCTTCCTTTAGCAAGGATCAAGAAAATCATGAAGGCCGATGAGGATGTG
AGAATGATATCAGCTGAGGCACCTGTTATATTTGCAAGGGCATGTGAAAT
GTTCATCTTGGAATTGACGCTGCGTTCCTGGAACCACACTGAAGAGAACA
AGAGGAGGACACTCCAAAAGAATGACATTGCGGCAGCAATCACTAGGACT
GATATATTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACCTGAAAGA
TGAAGTACT
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