FC873045

Overview
NameFC873045
Unique NameFC873045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 3
Query:    9 TIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLA 179
            T GK    E     +Y  TYEDKDGDWMLVGDVPW MF  +C+RLRIM+GS+A GLA
Sbjct:  190 TTGKDGLSESRKDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLA 246          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.884e-14
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 3
Query:   45 GSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLA 179
            G++Y PTYEDKDGDWMLVGDVPW MF+ +CKR+R+M+ SEA  L+
Sbjct:  143 GAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLS 187          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3
Query:   42 NGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGL 176
            N SD+A TYEDKDGD MLVGDVP+ MFI+TCKRLRIM+GSEA+GL
Sbjct:  148 NPSDFAVTYEDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    9 TIGKYSE-----REGYN---------GSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLA 179
            TIG++       R+G N         GS+Y  TYEDKD DWMLVGDVPW MFI +CK+LRIM+ SEA GLA
Sbjct:  224 TIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLA 294          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.349e-14
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 3
Query:   33 EGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLA 179
            E     +Y  TYEDKDGDWMLVGDVPW MF  +C+RLRIM+GS+A GLA
Sbjct:  204 ENQKDGEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLA 252          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA26_ORYSJ (Auxin-responsive protein IAA26 OS=Oryza sativa subsp. japonica GN=IAA26 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 3
Query:   33 EGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLA 179
            +GY   ++A  YED DGDWMLVGDVPW MF+++CKR+R+MR  EA+GL+
Sbjct:   89 DGYGEWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEARGLS 137          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 3
Query:   42 NGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKG 173
            + S++ P YEDKDGDWMLVGDVPW MF+ +CKRLRIM+ S+AKG
Sbjct:  134 DNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKG 177          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.720e-13
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 3
Query:   51 DYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKG 173
            ++ P YEDKDGDWMLVGDVPW MFI +CKRLRIM+ S+AKG
Sbjct:  126 EHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKG 166          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 3
Query:   42 NGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLA 179
            NG++   TYEDKD DWMLVGDVPW MF  +C+RLRIM+GS+A GLA
Sbjct:  210 NGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLA 255          
BLAST of FC873045 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 3
Query:   24 SEREGYNGSDYAPTYEDKDGDWMLVGDVPWGMFITTCKRLRIMRGSEAKGLA 179
            S  +     +Y  TYEDKD DWMLVGD+PW +F T+C++LRIMRGS+A G+A
Sbjct:  219 SRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMA 270          
The following BLAST results are available for this feature:
BLAST of FC873045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IAA17_ORYSJ1.104e-1463.16Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA23_ORYSJ1.884e-1468.89Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
IAA31_ORYSJ2.460e-1480.00Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
IAA27_ARATH2.460e-1456.34Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA3_ORYSJ9.349e-1467.35Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA26_ORYSJ1.595e-1361.22Auxin-responsive protein IAA26 OS=Oryza sativa sub... [more]
AUX22_SOYBN1.595e-1370.45Auxin-induced protein AUX22 OS=Glycine max GN=AUX2... [more]
IAA6_PEA2.720e-1375.61Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
IAA21_ORYSJ3.553e-1369.57Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA19_ORYSJ3.553e-1357.69Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CA01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873045 ID=FC873045; Name=FC873045; organism=Citrus clementina; type=EST; length=423bp
TCCAGTTAACCATTGGCAAATACTCAGAGAGGGAAGGCTACAATGGATCT
GATTATGCCCCAACATACGAGGATAAAGATGGTGATTGGATGCTCGTTGG
CGATGTTCCGTGGGGGATGTTTATTACCACTTGCAAGAGACTAAGAATCA
TGAGAGGATCAGAAGCCAAAGGCTTAGCCTGTGTATGAATGAAATATGAA
ACCCACCGAGTCAGATATGTAAATTCCTTTACGGTTTCTCCAAGACTTTT
ATGGATCTATGCGGAGAATTAAAAGAAAAGAAGCACATGTACAGCTCATG
AATGTTCGGACTTCGGAAATGCTCACTCATTTTATTTTGTTTCCCTTTCA
CGGCGGCCTTTTTGTTAGCCTACTGATAGCTCTTGATCAAAATGTATGAA
TTGTCAAAAAAAAAAAAAAAAAA
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