FC873055

Overview
NameFC873055
Unique NameFC873055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14150 contig Ccv1_Contig14150:632..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.211e-35
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 2 
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  207 FDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.211e-35
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 2 
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.500e-35
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 2 
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  196 FDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.500e-35
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 2 
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 FDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.225e-34
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 2 
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  193 FDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
[Close]
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.225e-34
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 2 
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  166 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237
[Close]
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.225e-34
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 2 
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  196 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.225e-34
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 2 
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  196 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.600e-34
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 2 
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  193 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264
[Close]
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.565e-34
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 2 
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of FC873055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2A_PYRPY4.211e-3594.44Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_SINAL4.211e-3597.22Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_TOBAC5.500e-3595.83Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU5.500e-3597.22Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB48_MAIZE1.225e-3494.44Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB25_SOLLC1.225e-3494.44Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_ARATH1.225e-3494.44Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.225e-3494.44Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_LEMGI1.600e-3494.44Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_TOBAC3.565e-3494.44Chlorophyll a-b binding protein 36, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB03FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873055 ID=FC873055; Name=FC873055; organism=Citrus clementina; type=EST; length=459bp
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGT
TTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGC
CGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCA
ACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAA
ATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCA
AAACATGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGT
ATTTTCATTCAATCTCTTGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCT
TACAGGTTGTGCCAGAATCTAGTTACAAGTTTACATCAAAAAAAAAAAAA
AAAAAAAAA
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