FC873055

Overview
NameFC873055
Unique NameFC873055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14150 contig Ccv1_Contig14150:632..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.769e-33
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 2
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  196 FDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.942e-33
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 2
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  192 FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.942e-33
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 2
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  192 FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.942e-33
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 2
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   53 FDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.555e-32
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 2
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  195 FDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.692e-32
Identity = 62/72 (86.11%), Postives = 70/72 (97.22%), Query Frame = 2
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  194 FDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.073e-30
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 2
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 214
            FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  194 FDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.391e-30
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 2
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 214
            FDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  197 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.079e-30
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 2
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 214
            FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of FC873055 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.818e-28
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 2
Query:    2 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 211
            FDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  185 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of FC873055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_PETSP1.769e-3391.67Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_ORYSJ3.942e-3390.28Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.942e-3390.28Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA3.942e-3393.06Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_WHEAT2.555e-3290.28Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA5.692e-3286.11Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC1.073e-3088.73Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA2.391e-3088.73Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU4.079e-3087.32Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO3.818e-2884.29Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB03FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873055 ID=FC873055; Name=FC873055; organism=Citrus clementina; type=EST; length=459bp
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGT
TTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGC
CGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCA
ACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAA
ATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCA
AAACATGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGT
ATTTTCATTCAATCTCTTGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCT
TACAGGTTGTGCCAGAATCTAGTTACAAGTTTACATCAAAAAAAAAAAAA
AAAAAAAAA
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