FC873060

Overview
NameFC873060
Unique NameFC873060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873060 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.328e-18
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   73 SKEELEIA-LNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            S E LE A +N+ +E +S N VV+FSKT C YCT  K+L + +  ++KVVELD+   G++ Q AL + TG RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   45 SLENLETAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLP 145          
BLAST of FC873060 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.863e-18
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   97 LNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            +N+ +E +S+N VV+FSKT C YCT  K L   +  ++KVVELD+   GS+ Q AL + TG+RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   51 VNQIQETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP 142          
BLAST of FC873060 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.046e-18
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   28 RKLKSSQMGLFQNKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            R+ + S  G  ++  ++EEL   L     ++  + VV+FSK+YC + TRVKEL   LG    V+ELD   DG+++Q  L+E T Q+TVPN+F+   H+GGCD   + +Q G L
Sbjct:  147 RRARLSSPGPSRSSEAREELRRHL---VGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLL 256          
BLAST of FC873060 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.046e-18
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   73 SKEELEIA-LNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            S E L  A +N+ +E +S N VV+FSKT C YCT  K+L   +  ++KVVELD+   G++ Q AL + TG+RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   48 SLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP 148          
BLAST of FC873060 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.607e-18
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 1
Query:  100 NKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            +  K  ++ NPVV++SK++C Y   VK L K++G    V+ELD + + G ++Q  L   TGQ TVPNVFIGGKHIGGC   ++ H+ G+L
Sbjct:   61 DSVKRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGEL 150          
BLAST of FC873060 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.124e-17
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  109 KEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            K+ +SS+ +V+FSK+YC YC + K + ++L     VVELD   DG  IQ AL E  G+RTVP VFI GKH+GG D  ++ ++ G+L
Sbjct:   36 KKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGEL 121          
BLAST of FC873060 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.271e-17
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  109 KEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            ++ V+ N VV++SKT+C YCT VK L K+LG    VVELD +   G ++Q  L   TGQ TVPNVF+ GKHIGGC   ++ ++ G L
Sbjct:   74 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDL 160          
BLAST of FC873060 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.579e-17
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  109 KEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFK--VVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            K  V ++ VV+FSK+YC YC R K + K+L    +  VVELD   DG +IQ AL++  G+RTVP VF+ GKH+GG D  +E ++ GKL
Sbjct:   37 KSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKL 124          
BLAST of FC873060 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.579e-17
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   97 LNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            +N+ +E +S+N VV+FSK+ C YC+  K++   +  ++KVVELD+   GS+ Q AL + TG+RTVP +F+ G  IGG       H+ GKL+P
Sbjct:   50 VNQIQETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLP 141          
BLAST of FC873060 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.579e-17
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   97 LNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            +N+ +E +S+N VV+FSKT C YC+  K++   +  ++K VELD+   G++ Q AL + TG+RTVP +F+ G+ IGG       H+ GKL+P
Sbjct:   50 VNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLP 141          
The following BLAST results are available for this feature:
BLAST of FC873060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GLRX2_PONAB1.328e-1846.53Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
GLRX2_BOVIN3.863e-1846.74Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]
TRXR3_HUMAN5.046e-1840.71Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GLRX2_HUMAN5.046e-1845.54Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GRS10_ORYSJ8.607e-1846.67Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
GRXC4_ARATH1.124e-1747.67Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRXC5_ARATH4.271e-1749.43Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GRXC8_ORYSJ5.579e-1748.86Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GLRX2_RAT5.579e-1743.48Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
GLRX2_MOUSE5.579e-1742.39Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB08FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873060 ID=FC873060; Name=FC873060; organism=Citrus clementina; type=EST; length=784bp
ACAATACCAAACAACAAAGGAAAGGATCGAAAACTAAAATCAAGTCAAAT
GGGTTTATTTCAAAACAAAATAAGCAAAGAAGAGCTTGAAATCGCGCTTA
ACAAGGCCAAGGAAATCGTCTCCTCCAATCCCGTCGTCGTCTTCAGCAAA
ACCTACTGTGGTTATTGTACAAGGGTGAAGGAGTTGCTTAAACAGCTTGG
AACGAGTTTCAAAGTCGTAGAATTGGATATTGAAAGTGATGGAAGTAAAA
TTCAAGCAGCTCTGGCAGAGTGGACTGGGCAGAGAACCGTACCCAATGTG
TTCATTGGGGGAAAACACATCGGTGGCTGCGACACTGTAATAGAGAAGCA
CCAAGGAGGAAAGCTGGTCCCCCTTCTTCGTGATGCCGGTGCCCTCGCCC
TTGCTGACAAATGATAATTTTGCTCCGTTAAGATCAGAACCACAAGTTCG
TGTACATGGGCTGAAGTGAAGAAATGCAACAATATTAAAGTGACCAATTA
TATGGTGTGTAAAAGTAACAATCGATGTCCACTTTATTTGTGTGTGTGTG
TGTGTTTTATAGACATTTCTCTGCTTGATTGTAAAGTAAAATGAGAGATA
TGCATGCGGTGCTGCTCTCTGTATAAGGAGGGAAGCATTCGACCGGGAAG
CGGCTTCAGAGGTTTGTATTGTTGGTGAGACACCAACTAGCGCCTCTGGT
TCATTCACATTTTATCGCAACCGGCAACGCTGGCTTTCAAGTTCAACTAG
CATGCGGTAGAAAAGTAAGTTGCATATTTATATA
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