FC873063

Overview
NameFC873063
Unique NameFC873063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length341
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10211 contig Ccv1_Contig10211:127..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.877e-38
Identity = 79/108 (73.15%), Postives = 93/108 (86.11%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            F A+I  +MSLIINTFYSNKEIFLRELISN+SDALD IR+ESLTD SKLD+  EL I I+P+    TL+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   17 FQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDILPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.181e-38
Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 3
Query:    3 GHSNVFHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            G +  F A+I  +MSLIINTFYSNKEIFLRELISNSSDALD IR+++LT+ ++L+   EL+I I P+K + TL+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    7 GETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYQALTEPAELETGKELYIKITPNKADKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 119          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HSP83_TRYBB (Heat shock protein 83 OS=Trypanosoma brucei brucei GN=HSP83 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.460e-38
Identity = 79/108 (73.15%), Postives = 91/108 (84.26%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            F A+I  +MSLIINTFYSNKEIFLRELISNSSDA D IR++SLT++S L  +P L I +IPD+ N TL++ DSGIGMTKADLVNNLGTIARSGTK FMEAL AG D+S
Sbjct:    7 FQAEINQLMSLIINTFYSNKEIFLRELISNSSDACDKIRYQSLTNQSVLGDEPHLRIRVIPDRVNKTLTVEDSGIGMTKADLVNNLGTIARSGTKSFMEALEAGGDMS 114          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.460e-38
Identity = 79/108 (73.15%), Postives = 93/108 (86.11%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            F A+I  +MSLIINTFYSNKEIFLRELISN+SDALD IR+ESLTD SKLD   +L I I+P+  + TL+++D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   17 FQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDTGKDLKIDIVPNPRDPTLTLLDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.131e-38
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            F A+I  +MSLIINTFYSNKEI+LRELISN+SDALD IR+++LT+ S+LD   ELFI I P+K   TL+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   10 FQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 117          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.131e-38
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            F A+I  +MSLIINTFYSNKEI+LRELISN+SDALD IR+++LT+ S+LD   ELFI I P+K   TL+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   10 FQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 117          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.131e-38
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            F A+I  +MSLIINTFYSNKEIFLREL+SN+SDALD IR+ESLTD +KLD+  +L I IIP+    TL++ID+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   16 FQAEIAQLMSLIINTFYSNKEIFLRELVSNASDALDKIRYESLTDPTKLDSGKDLKIDIIPNVQERTLTLIDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 123          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HSP83_LEIIN (Heat shock protein 83-1 OS=Leishmania infantum GN=HSP83-1 PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.216e-37
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            F A+I  +MSLIINTFYSNKEIFLRELISN+SDA D IR++SLTD S L   P L I ++PDK N TL++ D+GIGMTKADLVNNLGTIARSGTK FMEAL AG D+S
Sbjct:    7 FQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMS 114          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HSP82_AJECA (Heat shock protein 82 OS=Ajellomyces capsulata GN=HSP82 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.710e-37
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            F A+I+ ++SLIINT YSNKEIFLRELISN SDALD IR+++L+D SKL++  +L I I PDK N TL+I D+GIGMTKADLVNNLGTIARSGTK+FMEAL AGAD+S
Sbjct:    8 FQAEISQLLSLIINTVYSNKEIFLRELISNFSDALDKIRYKALSDPSKLESDKDLRIDITPDKENKTLTIRDTGIGMTKADLVNNLGTIARSGTKQFMEALTAGADIS 115          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HSP90_SCHPO (Heat shock protein 90 homolog OS=Schizosaccharomyces pombe GN=swo1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.884e-37
Identity = 76/108 (70.37%), Postives = 91/108 (84.26%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            F A+I+ +MSLIINT YSNKEIFLRELISN+SDALD IR++SL+D   LDA+ +LFI I PDK N  LSI D+GIGMTK DL+NNLG IA+SGTK+FMEA A+GAD+S
Sbjct:    9 FEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADIS 116          
The following BLAST results are available for this feature:
BLAST of FC873063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HS90B_MOUSE1.877e-3873.15Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]
HSP90_BRUPA4.181e-3869.03Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]
HSP83_TRYBB5.460e-3873.15Heat shock protein 83 OS=Trypanosoma brucei brucei... [more]
HS90B_CHICK5.460e-3873.15Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]
HSP90_CAEEL7.131e-3872.22Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]
HSP90_CAEBR7.131e-3872.22Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]
HS90B_DANRE7.131e-3872.22Heat shock protein HSP 90-beta OS=Danio rerio GN=h... [more]
HSP83_LEIIN1.216e-3772.22Heat shock protein 83-1 OS=Leishmania infantum GN=... [more]
HSP82_AJECA2.710e-3772.22Heat shock protein 82 OS=Ajellomyces capsulata GN=... [more]
HSP90_SCHPO7.884e-3770.37Heat shock protein 90 homolog OS=Schizosaccharomyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CB11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873063 ID=FC873063; Name=FC873063; organism=Citrus clementina; type=EST; length=341bp
AGGGCCATTCCAACGTCTTTCATGCTGACATCACCCTGATGATGAGTTTG
ATCATCAACACCTTTTACAGCAACAAGGAGATCTTTCTTCGTGAGCTCAT
CAGCAACTCCTCCGATGCATTGGATAACATCAGATTTGAAAGCTTGACAG
ACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATCCACATTATCCCT
GATAAGACCAACAACACTTTGTCTATTATTGACAGTGGCATTGGCATGAC
TAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTAGGTCTGGGACCA
AAGAGTTCATGGAGGCATTGGCTGCAGGGGCGGATGTGAGC
back to top