FC873063

Overview
NameFC873063
Unique NameFC873063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length341
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10211 contig Ccv1_Contig10211:127..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.301e-25
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDA--QPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 341
            F A+++ +M +IIN+ YSNK+IFLRELISN+SDALD IRF +LTDK  L      +L I I  DK    LSI D GIGMTK DL+ NLGTIA+SGT  F+E +    D++
Sbjct:   82 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEILGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN 191          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_RUTMC (Chaperone protein htpG OS=Ruthia magnifica subsp. Calyptogena magnifica GN=htpG PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.923e-25
Identity = 51/103 (49.51%), Postives = 83/103 (80.58%), Query Frame = 3
Query:   12 NVFHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 320
            + F  +++ ++ L+I++ YSNKEIFLREL+SNSSDA+D ++F+SL+D + ++ + EL IHI  +K  +T++I D+GIGMT+A++  N+GTIA SGTK+F+++L
Sbjct:    7 HTFQTEVSQLLDLMIHSLYSNKEIFLRELVSNSSDAVDKLKFKSLSDDTLIEGKEELQIHINTNKDASTITITDNGIGMTEAEVNKNIGTIANSGTKKFLKSL 109          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_ALHEH (Chaperone protein htpG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.181e-24
Identity = 52/101 (51.49%), Postives = 78/101 (77.23%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 320
            F A++  ++ L+I++ YSNK+IFLRELISN+SDA+D +RF+SL D+S L+ + +L I +  DK   T+++ D+GIGMT+ ++  NLGTIARSGTK F++ L
Sbjct:   12 FQAEVQQLLHLMIHSLYSNKDIFLRELISNASDAIDKLRFQSLQDESLLEGEGDLRIRVSVDKDARTITVADNGIGMTRDEVAENLGTIARSGTKAFLDQL 112          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_HALHL (Chaperone protein htpG OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 51/101 (50.50%), Postives = 77/101 (76.24%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 320
            F A++  ++SL+I++ YSN+E+FLRELISN+SDA+D +RFE+L  +S  +  PEL I +  D    T+++ID+GIGM++ D++ NLGTIA SGT+ F+E L
Sbjct:   12 FQAEVQQLLSLMIHSVYSNREVFLRELISNASDAIDKLRFEALQQESLYEDDPELKIRVEADPEARTVTVIDNGIGMSREDVIENLGTIAHSGTRRFLEQL 112          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_NITEC (Chaperone protein htpG OS=Nitrosomonas eutropha (strain C91) GN=htpG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.436e-24
Identity = 51/101 (50.50%), Postives = 79/101 (78.22%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 320
            F A+   ++ L+I++ YSNKEIFLRELISN+SDA D +RFE L+D +  ++ P+L I I  DK   T++I D+GIGM++ ++++N+GTIA+SGT+EF+++L
Sbjct:   12 FQAEAKQLLRLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDTALYESDPDLKIRIAYDKEARTITISDNGIGMSRQEVIDNIGTIAKSGTREFIDSL 112          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_TREDE (Chaperone protein htpG OS=Treponema denticola GN=htpG PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.487e-24
Identity = 55/103 (53.40%), Postives = 78/103 (75.73%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 326
            F  ++  ++SLII++ YSNKEIFLREL+SN+SDALD +++ +L+D++    + E  I I  D T NTL++ D+G+GM + DL NNLGTIARSGTK F++ LAA
Sbjct:    6 FETEVNQLLSLIIHSLYSNKEIFLRELVSNASDALDKLKYLTLSDEAYKQIKFEPRIDICFDDTANTLTVRDTGLGMNEEDLKNNLGTIARSGTKAFLDQLAA 108          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_THICR (Chaperone protein htpG OS=Thiomicrospira crunogena (strain XCL-2) GN=htpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.861e-24
Identity = 51/102 (50.00%), Postives = 78/102 (76.47%), Query Frame = 3
Query:    9 SNVFHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 314
            ++ F  ++  ++ L+I+  YSNKEIFLREL+SN+SDALD +RFES+++ +  + + EL I +  DK   T+SIID+GIGMT+ +++ N+GTIA SGTK+F+E
Sbjct:    6 THAFQTEVNQLLKLMIHALYSNKEIFLRELVSNASDALDKLRFESVSNDALSEGESELAIQVGFDKEARTVSIIDNGIGMTRDEVIANIGTIANSGTKKFLE 107          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJR (Chaperone protein htpG OS=Campylobacter jejuni (strain RM1221) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.654e-24
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 332
            F  ++  ++ L+I++ YSNKEIFLRELISN+SDALD + F S++D      + E  I I  DK   TLSI D+GIGM K DL+NNLGTIA+SGTK F+E L+  A
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDA 107          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJJ (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.654e-24
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 332
            F  ++  ++ L+I++ YSNKEIFLRELISN+SDALD + F S++D      + E  I I  DK   TLSI D+GIGM K DL+NNLGTIA+SGTK F+E L+  A
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDA 107          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJE (Chaperone protein htpG OS=Campylobacter jejuni GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.654e-24
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 332
            F  ++  ++ L+I++ YSNKEIFLRELISN+SDALD + F S++D      + E  I I  DK   TLSI D+GIGM K DL+NNLGTIA+SGTK F+E L+  A
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDA 107          
The following BLAST results are available for this feature:
BLAST of FC873063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ENPL_CATRO5.301e-2555.45Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
HTPG_RUTMC6.923e-2549.51Chaperone protein htpG OS=Ruthia magnifica subsp. ... [more]
HTPG_ALHEH1.181e-2451.49Chaperone protein htpG OS=Alkalilimnicola ehrliche... [more]
HTPG_HALHL2.014e-2450.50Chaperone protein htpG OS=Halorhodospira halophila... [more]
HTPG_NITEC3.436e-2450.50Chaperone protein htpG OS=Nitrosomonas eutropha (s... [more]
HTPG_TREDE4.487e-2453.40Chaperone protein htpG OS=Treponema denticola GN=h... [more]
HTPG_THICR5.861e-2450.00Chaperone protein htpG OS=Thiomicrospira crunogena... [more]
HTPG_CAMJR7.654e-2454.29Chaperone protein htpG OS=Campylobacter jejuni (st... [more]
HTPG_CAMJJ7.654e-2454.29Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_CAMJE7.654e-2454.29Chaperone protein htpG OS=Campylobacter jejuni GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873063 ID=FC873063; Name=FC873063; organism=Citrus clementina; type=EST; length=341bp
AGGGCCATTCCAACGTCTTTCATGCTGACATCACCCTGATGATGAGTTTG
ATCATCAACACCTTTTACAGCAACAAGGAGATCTTTCTTCGTGAGCTCAT
CAGCAACTCCTCCGATGCATTGGATAACATCAGATTTGAAAGCTTGACAG
ACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATCCACATTATCCCT
GATAAGACCAACAACACTTTGTCTATTATTGACAGTGGCATTGGCATGAC
TAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTAGGTCTGGGACCA
AAGAGTTCATGGAGGCATTGGCTGCAGGGGCGGATGTGAGC
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