FC873063

Overview
NameFC873063
Unique NameFC873063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length341
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJD (Chaperone protein htpG OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.654e-24
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 332
            F  ++  ++ L+I++ YSNKEIFLRELISN+SDALD + F S++D      + E  I I  DK   TLSI D+GIGM K DL+NNLGTIA+SGTK F+E L+  A
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKNDLINNLGTIAKSGTKSFLENLSGDA 107          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJ8 (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.654e-24
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 332
            F  ++  ++ L+I++ YSNKEIFLRELISN+SDALD + F S++D      + E  I I  DK   TLSI D+GIGM K DL+NNLGTIA+SGTK F+E L+  A
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDA 107          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_MAGSA (Chaperone protein htpG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=htpG PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.997e-24
Identity = 53/110 (48.18%), Postives = 78/110 (70.91%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA--DVS 341
            F A++  ++ +++++ YSNKEIFLRELISN+SD+ D +R+ ++T+   LD   E  I ++PDK   TL+IID+G GM+  +L+ NLGTIA+SGT EF+  L   A  DVS
Sbjct:    8 FQAEVGKLLDIVVHSLYSNKEIFLRELISNASDSCDRLRYGAITEPDLLDGDSEFRIRLVPDKDAGTLTIIDNGQGMSHDELIANLGTIAKSGTSEFLARLTGDAKKDVS 117          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_RALEH (Chaperone protein htpG OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.705e-23
Identity = 52/102 (50.98%), Postives = 76/102 (74.51%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 323
            F A++  ++ L+I++ YSNKEIFLREL+SN+SDA D +RFE++ + S L+   +L I I  D    TL+I D+GIGM++ + ++NLGTIARSGTKEF + L+
Sbjct:   10 FQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADAKARTLTITDNGIGMSRDEAIHNLGTIARSGTKEFFQQLS 111          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_METFK (Chaperone protein htpG OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=htpG1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.705e-23
Identity = 51/101 (50.50%), Postives = 76/101 (75.25%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 320
            F A++  ++ L+I++ YSNKEI LRELISN+SDA D +RFE+L D S      +L I +  DK   T++I D+GIGM++ +++NN+GTIA+SGTKEF+++L
Sbjct:   13 FQAEVKQLLQLMIHSLYSNKEIVLRELISNASDAADKLRFEALADNSLYGNDSDLKIRVSFDKQARTITISDNGIGMSREEVINNIGTIAKSGTKEFLQSL 113          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_THIDA (Chaperone protein htpG OS=Thiobacillus denitrificans (strain ATCC 25259) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 50/102 (49.02%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 323
            F A++  ++ L+I++ YSNK+IFLRELISN+SDA D +RFE+L+D +  +  PEL I I  D+   TL+I D+GIGM++ ++++++GTIA+SGT+EF   L+
Sbjct:   12 FQAEVKQLLQLMIHSLYSNKDIFLRELISNASDAADKLRFEALSDAALFENDPELKIRIAFDRDARTLTISDNGIGMSRQEVIDHIGTIAKSGTREFFSQLS 113          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_RALEJ (Chaperone protein htpG OS=Ralstonia eutropha (strain JMP134) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 52/102 (50.98%), Postives = 74/102 (72.55%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 323
            F A++  ++ L+I++ YSNKEIFLREL+SN+SDA D +RFE++ + S L+   +L I I  D    TL I D+GIGM++ + + NLGTIARSGTKEF + L+
Sbjct:   10 FQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADTAARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLS 111          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_VESOH (Chaperone protein htpG OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.909e-23
Identity = 49/101 (48.51%), Postives = 80/101 (79.21%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 320
            F  +++ ++ L+I++ YSNKEIFLRELISN+SDA+D ++F+SL+D + ++ +  L IHI  +K  NT++I D+GIGM++ ++  N+GTIA SGTK+F+++L
Sbjct:    9 FQTEVSQLLHLMIHSLYSNKEIFLRELISNASDAVDKLKFKSLSDDTLIEGKEALQIHIDVNKDANTITITDNGIGMSEVEVNKNIGTIANSGTKKFLKSL 109          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_NITMU (Chaperone protein htpG OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.909e-23
Identity = 48/101 (47.52%), Postives = 78/101 (77.23%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 320
            F  ++  ++ L+I++ YSNKEIFLRELISN+SDA D +RFE+LTD +  ++  +L I +  DK   T+++ D+GIGM++ ++++++GTIA+SGT+EF +AL
Sbjct:   12 FQTEVKQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEALTDGALYESDSDLKIRVSYDKEARTITVADNGIGMSRQEVIDHIGTIAKSGTREFFDAL 112          
BLAST of FC873063 vs. ExPASy Swiss-Prot
Match: HTPG_CUPTR (Chaperone protein htpG OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.909e-23
Identity = 52/102 (50.98%), Postives = 74/102 (72.55%), Query Frame = 3
Query:   18 FHADITLMMSLIINTFYSNKEIFLRELISNSSDALDNIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 323
            F A++  ++ L+I++ YSNKEIFLREL+SN+SDA D +RFE++ + S L+   +L I I  D    TL I D+GIGM++ + + NLGTIARSGTKEF + L+
Sbjct:   10 FQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADAKARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLS 111          
The following BLAST results are available for this feature:
BLAST of FC873063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_CAMJD7.654e-2454.29Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_CAMJ87.654e-2454.29Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_MAGSA9.997e-2448.18Chaperone protein htpG OS=Magnetospirillum magneti... [more]
HTPG_RALEH1.705e-2350.98Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_METFK1.705e-2350.50Chaperone protein htpG OS=Methylobacillus flagella... [more]
HTPG_THIDA2.227e-2349.02Chaperone protein htpG OS=Thiobacillus denitrifica... [more]
HTPG_RALEJ2.227e-2350.98Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_VESOH2.909e-2348.51Chaperone protein htpG OS=Vesicomyosocius okutanii... [more]
HTPG_NITMU2.909e-2347.52Chaperone protein htpG OS=Nitrosospira multiformis... [more]
HTPG_CUPTR2.909e-2350.98Chaperone protein htpG OS=Cupriavidus taiwanensis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873063 ID=FC873063; Name=FC873063; organism=Citrus clementina; type=EST; length=341bp
AGGGCCATTCCAACGTCTTTCATGCTGACATCACCCTGATGATGAGTTTG
ATCATCAACACCTTTTACAGCAACAAGGAGATCTTTCTTCGTGAGCTCAT
CAGCAACTCCTCCGATGCATTGGATAACATCAGATTTGAAAGCTTGACAG
ACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATCCACATTATCCCT
GATAAGACCAACAACACTTTGTCTATTATTGACAGTGGCATTGGCATGAC
TAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTAGGTCTGGGACCA
AAGAGTTCATGGAGGCATTGGCTGCAGGGGCGGATGTGAGC
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