FC873069

Overview
NameFC873069
Unique NameFC873069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig989 contig Ccv1_Contig989:506..1118. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.786e-35
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 2
Query:    5 IEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            +EGVV EI+ITF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVA+ +F  NW+YWV
Sbjct:  140 LEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAADFAGNWVYWV 219          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.180e-28
Identity = 57/107 (53.27%), Postives = 73/107 (68.22%), Query Frame = 2
Query:    8 EGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPLSND 328
            +G++ EII+TF L++TVYAT  DPKKGSL    P+  GF+VGANILA G FSG SMNPARSFGPA+ SGN+ D+W+YWV              NV +   H P+++D
Sbjct:  137 QGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENVLIDRPHVPVADD 243          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.180e-28
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            A+  VV+E+++TFGLVYTVYATA DPKKG LG IAPIAIGFIVGANILA G F G SMNPA SFGPAV +G ++++W+YWV
Sbjct:  141 AMNAVVLEMVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWENHWVYWV 221          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 2
Query:    8 EGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            E +V+EI++TFGLVYTVYATA DPKKGSLGTIAPIAIGFIVGANIL  G F G SMNPA SFGPA+ S +++  W+YWV
Sbjct:  142 EALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWSWESQWVYWV 220          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.432e-28
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            A+ G+V+EII+TFGLVY VY+T  DPK+GSLG IAP+AIG IVGANIL  GPFSG SMNPAR+FGPA+    + D+WIYWV
Sbjct:  149 AVNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWRWHDHWIYWV 229          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.854e-28
Identity = 64/109 (58.72%), Postives = 73/109 (66.97%), Query Frame = 2
Query:    8 EGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPL-SNDY 331
            E +V+EI++TFGLVYTVYATA DPKKGSLGTIAPIAIGFIVGANIL  G F G SMNPA SFGPA+ S  +   W+YWV               +F+   H  L S DY
Sbjct:  142 EALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWEWGYQWVYWVGPLIGGGLAGVIYELLFISHTHEQLPSTDY 250          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.986e-28
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            A   VV EI++TFGLVYTVYATA DPKKG LG IAPIAIGFIVGANILA G F G SMNPA SFGPAV +G + ++W+YW+
Sbjct:  141 AWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWDNHWVYWL 221          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.986e-28
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYW 241
            ++  +V EI++TFGLVYTVYATA DPK GSLGTIAPIAIGFIVGANILA G FSG SMNPA +FGPAV S  + ++W+YW
Sbjct:  142 SLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYW 221          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.703e-27
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 2
Query:   14 VVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPL-SNDY 331
            +V+EI++TFGLVYTVYATA DPKKG++G IAPIAIGFIVGANIL  G F+G SMNPA SFGPAV S ++ ++W+YW                +F++S H  L + DY
Sbjct:  144 LVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY 250          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.703e-27
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 2
Query:   14 VVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPL-SNDY 331
            +V+EI++TFGLVYTVYATA DPKKG++G IAPIAIGFIVGANIL  G F+G SMNPA SFGPAV S ++ ++W+YW                +F++S H  L + DY
Sbjct:  143 LVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY 249          
The following BLAST results are available for this feature:
BLAST of FC873069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
TIP22_MAIZE3.786e-3587.50Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP41_ARATH1.180e-2853.27Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP12_MAIZE1.180e-2871.60Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_ORYSJ1.541e-2873.42Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP31_ARATH3.432e-2869.14Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP11_MAIZE5.854e-2858.72Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP12_ORYSJ9.986e-2871.60Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP12_ARATH9.986e-2871.25Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP1_MEDTR1.703e-2756.07Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA1.703e-2756.07Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC05FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873069 ID=FC873069; Name=FC873069; organism=Citrus clementina; type=EST; length=613bp
AGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTTTGGTCT
ACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTGGGCACC
ATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCTGGCCGC
CGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTTCGGGCCTG
CCGTTGCCAGCGGCAACTTCCAGGACAACTGGATCTACTGGGTTGGCCCT
CTCATTGGCGGCGGCCTTGCGGGGCTCATCTATGGCAATGTGTTCATGCA
CTCTGAACATGCACCCCTATCTAATGACTATTAATTCATTAGTTAAACTT
TGTTTAAAAGTTTAGTTAAATCATTTGATCACCTGCTTTTGGCTCTTTCT
TTTTTGTAATAAAAGAAGGAAAAGCAGCTTTGGCTCTTTCTTCTTTTCTT
CTTTAGTTTCTTGGTATCCTTCTTTTTAAATCATTTCTTTTGGAGGTTGT
AAAAAGTCTTTGTTGTGGTGGTCCATTGCGGCTTTTCTGACGATAATGGA
TGGATTGGGAGACATGCTTGAATGACACTCTTTAGTCTTTAAAAAAAAAA
AAAAAAAAAAAAA
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