FC873069

Overview
NameFC873069
Unique NameFC873069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig989 contig Ccv1_Contig989:506..1118. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.703e-27
Identity = 62/110 (56.36%), Postives = 74/110 (67.27%), Query Frame = 2
Query:    5 IEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPL-SNDY 331
            +   V EI++TFGLVYTVYATA DPK GSLGTIAPIAIGFIVGANILA G FSG SMNPA +FGPAV S  + ++W+YW                 F+++ H  L + DY
Sbjct:  142 LNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVGGGIAGLIYEVFFINTTHEQLPTTDY 251          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.453e-27
Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 2
Query:   14 VVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSE-HAPL-SNDY 331
            VV EI++TFGLVYTVYATA DPKKG +G IAP+AIG IVGANIL  G F G SMNPA SFGPAV S  + ++W+YWV               +F+ S  H PL SND+
Sbjct:  145 VVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTIFIGSNGHEPLPSNDF 252          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.212e-26
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 2
Query:    5 IEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            + G++MEII+TF LVY VY+TA DPK+GS+G IAP+AIG IVGANIL  GPF G SMNPAR+FGPA+    + ++WIYWV
Sbjct:  150 LHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALVGWRWSNHWIYWV 229          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.698e-24
Identity = 51/110 (46.36%), Postives = 72/110 (65.45%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFM-HSEHAPLSND 328
            A+ GV+ME ++TF L++ VYAT  DP++ ++G + P+ +G +VGAN+LA GPFSG SMNPARSFGPA+ +G + D+W+YWV               +FM    H PL  D
Sbjct:  140 ALRGVLMEAVLTFSLLFAVYATVVDPRR-AVGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALVAGVWADHWVYWVGPLIGGPLAGLVYDGLFMAQGGHEPLPRD 248          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.949e-23
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   14 VVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            V++E ++TFG VY  YAT  DPK+G LGTIAP+A+GF++GAN+LA GPF G  MNPAR FGPA+    ++ +W+YW+
Sbjct:  154 VLLEAVMTFGFVYAYYATVVDPKRGHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWL 230          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.342e-23
Identity = 43/77 (55.84%), Postives = 61/77 (79.22%), Query Frame = 2
Query:   14 VVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            V++E ++TFGL+Y  YAT  DPK+G +GTIAP+A+GF++GAN+LA GPF G  MNPAR FGPA+    ++ +W+YW+
Sbjct:  149 VLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWL 225          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.155e-22
Identity = 43/77 (55.84%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   14 VVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            V++E  +TFGL+Y  YAT  DPK+G +GTIAP+A+GF++GAN+LA GPF G  MNPAR FGPA+    ++ +W+YW+
Sbjct:  150 VLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWL 226          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.814e-22
Identity = 45/77 (58.44%), Postives = 62/77 (80.52%), Query Frame = 2
Query:   14 VVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            +++E+++TFGLVYTVYATA D + G  G IAP+AIG + GANILA GPF G +MNPAR+FGPA+   N++ +W+YW+
Sbjct:  152 LLLEVVMTFGLVYTVYATAVDRRSGG-GDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWL 227          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.269e-22
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 2
Query:   17 VMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            ++E+++TFGL+YTVY TA DPK+G++  IAP+AIG IVGANIL  GPF G  MNPA +FGP++    +  +WI+WV
Sbjct:  146 ILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQWHQHWIFWV 221          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.269e-22
Identity = 45/81 (55.56%), Postives = 62/81 (76.54%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            A   V ME ++TF L++ VYAT  D ++ ++G + P+ +G +VGANILA GP+SG SMNPARSFGPA+A+G + D+WIYWV
Sbjct:  139 AARAVAMEAVLTFSLLFAVYATVVDRRR-AVGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWADHWIYWV 218          
The following BLAST results are available for this feature:
BLAST of FC873069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
TIP11_ARATH1.703e-2756.36Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP13_ARATH8.453e-2757.41Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP32_ARATH3.212e-2665.00Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP44_MAIZE6.698e-2446.36Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIP32_MAIZE1.949e-2357.14Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP31_MAIZE4.342e-2355.84Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP31_ORYSJ2.155e-2255.84Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP32_ORYSJ2.814e-2258.44Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIPA_PHAVU6.269e-2256.58Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP43_ORYSJ6.269e-2255.56Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC05FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873069 ID=FC873069; Name=FC873069; organism=Citrus clementina; type=EST; length=613bp
AGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTTTGGTCT
ACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTGGGCACC
ATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCTGGCCGC
CGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTTCGGGCCTG
CCGTTGCCAGCGGCAACTTCCAGGACAACTGGATCTACTGGGTTGGCCCT
CTCATTGGCGGCGGCCTTGCGGGGCTCATCTATGGCAATGTGTTCATGCA
CTCTGAACATGCACCCCTATCTAATGACTATTAATTCATTAGTTAAACTT
TGTTTAAAAGTTTAGTTAAATCATTTGATCACCTGCTTTTGGCTCTTTCT
TTTTTGTAATAAAAGAAGGAAAAGCAGCTTTGGCTCTTTCTTCTTTTCTT
CTTTAGTTTCTTGGTATCCTTCTTTTTAAATCATTTCTTTTGGAGGTTGT
AAAAAGTCTTTGTTGTGGTGGTCCATTGCGGCTTTTCTGACGATAATGGA
TGGATTGGGAGACATGCTTGAATGACACTCTTTAGTCTTTAAAAAAAAAA
AAAAAAAAAAAAA
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