FC873069

Overview
NameFC873069
Unique NameFC873069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig989 contig Ccv1_Contig989:506..1118. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 2
Query:    8 EGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIY 238
            +   +E +I+F L++ V   A D +  ++G +A +A+G  V  N+L AGP +G SMNPARS GPA+ +G +   W+Y
Sbjct:  187 QAAALEFVISFFLMFVVSGVATDNR--AIGELAGLAVGATVAVNVLFAGPVTGASMNPARSLGPAMVAGRYGGVWVY 261          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 2
Query:    8 EGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            + + +EIII+F L++ +   A D +  ++G +A IA+G  +  N+  AGP SG SMNPARS GPA+    +   W+Y V
Sbjct:  159 QSLAIEIIISFLLMFVISGVATDDR--AIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPAIVKHVYTGLWVYVV 235          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: NIP32_ORYSJ (Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 2
Query:    5 IEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            +E   +E + TF L++ + A A DP   ++  +  +A+G  +  N L AGP +G SMNPAR+ GPA+A+G +   W+Y V
Sbjct:  210 VEAFFLEFVTTFVLLFIITALATDPN--AVKELIAVAVGATIMMNALVAGPSTGASMNPARTLGPAIATGRYTQIWVYLV 287          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 2
Query:   14 VVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            +V+EI++TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNPAR+  PAVAS  +   WIY++
Sbjct:  170 LVIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVYTGLWIYFL 244          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 2
Query:   14 VVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            +++EI++TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNPAR+  PAVAS  F   WIY++
Sbjct:  170 LLIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFL 244          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   11 GVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV-ASGNFQDNWIYW 241
            G ++E  ITF L+  V +   D +K +LG  AP+A+G  +    LAA  ++G SMNPARSFGPAV    N+ ++W+YW
Sbjct:  147 GFLVEACITFVLILLVQSVCDDRRK-NLGNAAPVAVGLAITCCHLAAIKYTGSSMNPARSFGPAVNGDDNWANHWVYW 223          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   14 VVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            + +EI++TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNPAR+  PAVAS  F   WIY++
Sbjct:  173 LAIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFL 247          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 2
Query:    8 EGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            +  ++EI +T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNPARSF PA+ + NF ++W+YWV
Sbjct:  129 QATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWV 206          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 2
Query:    8 EGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            +  ++EI +T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNPARSF PA+ + NF ++W+YWV
Sbjct:  129 QATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWV 206          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 2
Query:    8 EGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            +   +EI +T   V  ++AT  + + G LG+++ +AIGF +    L    ++G SMNPARSF PAV + NF ++W+YWV
Sbjct:  129 QATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFGLYYTGASMNPARSFAPAVLTRNFTNHWVYWV 206          
The following BLAST results are available for this feature:
BLAST of FC873069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
NIP12_ORYSJ2.235e-1140.26Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]
NIP1_NICAL2.919e-1140.51Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]
NIP32_ORYSJ3.812e-1138.75Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica G... [more]
NIP22_ORYSJ3.812e-1142.86Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]
NIP22_MAIZE3.812e-1142.86Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]
AQP_CICVR3.812e-1144.87Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
NIP23_MAIZE4.979e-1142.86Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
MIP_SHEEP4.979e-1137.97Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_BOVIN4.979e-1137.97Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_RANPI6.503e-1140.51Lens fiber major intrinsic protein OS=Rana pipiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC05FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873069 ID=FC873069; Name=FC873069; organism=Citrus clementina; type=EST; length=613bp
AGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTTTGGTCT
ACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTGGGCACC
ATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCTGGCCGC
CGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTTCGGGCCTG
CCGTTGCCAGCGGCAACTTCCAGGACAACTGGATCTACTGGGTTGGCCCT
CTCATTGGCGGCGGCCTTGCGGGGCTCATCTATGGCAATGTGTTCATGCA
CTCTGAACATGCACCCCTATCTAATGACTATTAATTCATTAGTTAAACTT
TGTTTAAAAGTTTAGTTAAATCATTTGATCACCTGCTTTTGGCTCTTTCT
TTTTTGTAATAAAAGAAGGAAAAGCAGCTTTGGCTCTTTCTTCTTTTCTT
CTTTAGTTTCTTGGTATCCTTCTTTTTAAATCATTTCTTTTGGAGGTTGT
AAAAAGTCTTTGTTGTGGTGGTCCATTGCGGCTTTTCTGACGATAATGGA
TGGATTGGGAGACATGCTTGAATGACACTCTTTAGTCTTTAAAAAAAAAA
AAAAAAAAAAAAA
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