FC873070

Overview
NameFC873070
Unique NameFC873070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.160e-20
Identity = 75/236 (31.78%), Postives = 119/236 (50.42%), Query Frame = 2
Query:  122 ITRVQYHVAASTTPIKPVDQTII---RRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNK--------NTNKSLYATALKFRILRQYGYNTPVKETFSRFMD--EKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHD--NIKHDDEHLCTLVNHALELPLHW 784
            + R    V  S T   P D T++   RRS +Y P+ W+  Y+ S+++KY  E+     + LK++V +ML  + K      L QLELID+L +LGVSYHFE EI  TL  +H K        +  + L+AT+L+FR+LRQ+G++   +  F   +D  E   FK    +++  G+              + + +    F T  + ++V   D  NI+  ++       HALE+P HW
Sbjct:   22 LRRPHRFVCKSMTKTTP-DTTLVELSRRSGNYQPSPWNHCYLLSIENKYASETEVITRDVLKKKVKSMLDDEKK----SRLEQLELIDDLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEEDLHATSLEFRLLRQHGFDVS-ENIFDVIIDQIESNTFK----TNNINGIISLYEASYLSTKSDTKLHKVIRPFATEQIRKFVDDEDTKNIEVREK-----AYHALEMPYHW 242          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.494e-19
Identity = 67/208 (32.21%), Postives = 101/208 (48.56%), Query Frame = 2
Query:  191 RRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKN--------TNKSLYATALKFRILRQYGYNTPVKETFSRFMD--EKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLHW 784
            RRS +Y P+ W   Y+ S+++KY  E        LK++V  ML++   V     L +LELID+L +LGVSYHFE EI   L   H +N          + L+ATAL+FR+LRQ+G+    ++ F   +D  E   FK    SD+   +              + + +    F T  +  +V   D  +  +  L  +  HALE+P HW
Sbjct:   47 RRSGNYQPSSWDHSYLLSIENKYVNEKEVITRHVLKKKVKKMLEE---VETKSRLEKLELIDDLQKLGVSYHFEQEINNILTNFHLENGKNIWKCDKEEDLHATALEFRLLRQHGFGVS-EDIFDVIIDKIESNTFK----SDNITSIITLYEASYLSTKSDTKLHKVIRPFATEQIRNFV--DDESETYNIMLREMAIHALEIPYHW 244          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.504e-17
Identity = 64/196 (32.65%), Postives = 103/196 (52.55%), Query Frame = 2
Query:  188 IRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN--KSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALE 769
            +R  AD+ P+IW   ++   D     E+  R  ++LKE+V  M+         +   +L  ID++ RLGVSYHF  EI+  L+ I++ N +    LY T+++FR+LR++GYN    + F++F DE+G FK SS + D +G+                I  +A SFTT +L   V   D+   ++      V+HAL+
Sbjct:   21 MRPKADFQPSIWGDLFLNCPDKNIDAETEKRH-QQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSC-DVFNKFKDEQGNFK-SSVTSDVRGL-LELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEE------VSHALK 202          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.271e-17
Identity = 65/196 (33.16%), Postives = 103/196 (52.55%), Query Frame = 2
Query:  188 IRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN--KSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALE 769
            IR  AD+ P+IW  D+  +   K       ++ ++LKE+V  M+         +   +L  ID++ RLGVSYHF  EI+  L+ I++ N +    LY T+L+FR+LR++GYN    + F++F DE+G FK SS + D +G+                I  +A SFTT +L   V   D+   ++      V+HAL+
Sbjct:   21 IRPKADFQPSIWG-DFFLNCPDKNIDAGTEKRHQQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSLRFRLLREHGYNVSC-DVFNKFKDEQGNFK-SSVTSDVQGL-LELYQASYLRVHGEDILDEAISFTTNHLSLAVSSLDHPLSEE------VSHALK 202          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.516e-17
Identity = 58/170 (34.12%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  188 IRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN--KSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYL 691
            +R  AD+ P+IW   ++   D     E+  R  ++LKE+V  M+         +   +L  ID++ RLGVSYHF  EI+  L+ I++ N +    LY T+L+FR+LR++G+N    + F++F DE+G FK SS + D +G+                I  +A SFTT +L
Sbjct:   21 MRPKADFQPSIWGDLFLNCPDKNIDAETEKRH-QQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSLRFRLLREHGFNVSC-DVFNKFKDEQGNFK-SSVTSDVRGL-LELYQASYLRVHGEDILDEAISFTTNHL 182          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 63/171 (36.84%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  191 RRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIH----NKNTNKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYL 691
            R  AD+ P IW   +I   D+     +   Q E+LK QV  M+ +    VD D   +L  ID + RLGVSYHFE EI+  L+ I+    N + +  LY TAL+FR+LR++G++    + F++F DE G FK +S + D +G+                I  +A SFTTA L
Sbjct:   21 RPKADFHPGIWGDMFIICPDTDIDAATEL-QYEELKAQVRKMIMEP---VD-DSNQKLPFIDAVQRLGVSYHFEKEIEDELENIYRDTNNNDADTDLYTTALRFRLLREHGFDISC-DAFNKFKDEAGNFK-ASLTSDVQGL-LELYEASYMRVHGEDILDEAISFTTAQL 183          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPSD4_ABIGR (Delta-selinene synthase OS=Abies grandis GN=ag4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.795e-15
Identity = 64/224 (28.57%), Postives = 103/224 (45.98%), Query Frame = 2
Query:  176 DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAML----QQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRT-LDRIHN------------KNTNKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSS-----IFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLH 781
            + +I RR+ ++   +W  D I SL+S Y   +Y   L+KL +++  +L    + DD   D D + +L+++D L  LG+  HFE EI+   LD ++              + +K L ATAL FR LR + YN         F DE G F  +   ++ +G                S     +  +A +FT  YL + +  H ++   D+ L   V +ALE P H
Sbjct:    6 ESSIPRRTGNHHGNVWDDDLIHSLNSPYGAPAYYELLQKLIQEIKHLLLTEMEMDDG--DHDLIKRLQIVDTLECLGIDRHFEHEIQTAALDYVYRWWNEKGIGEGSRDSFSKDLNATALGFRALRLHRYNVS-SGVLKNFKDENGKFFCNFTGEEGRGDKQVRSMLSLLRASEISFPGEKVMEEAKAFTREYLNQVLAGHGDVTDVDQSLLREVKYALEFPWH 226          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.344e-15
Identity = 51/143 (35.66%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  191 RRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDL-----DPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHN------------KNTNKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIF 568
            RR AD+ P +W  D+IQSL S Y G SY+ + E + E+V  M        +L     D L +L ++D++ RLG+  HF++EI+  LD +++             +T   L +TAL  R LR +GYN    +    F DEKG F
Sbjct:   70 RRIADHHPNLWEDDFIQSLSSPYGGSSYSERAETVVEEVKEMFNSIPNNRELFGSQNDLLTRLWMVDSIERLGIDRHFQNEIRVALDYVYSYWKEKEGIGCGRDSTFPDLNSTALALRTLRLHGYNVS-SDVLEYFKDEKGHF 211          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.344e-15
Identity = 62/196 (31.63%), Postives = 102/196 (52.04%), Query Frame = 2
Query:  188 IRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN--KSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALE 769
            +R  AD+ P+IW   ++   D     E+  R  ++LKE+V  M+        L    +L  ID++  LGVSYHF  EI+  L+ I++ N +    LY T+L+FR+LR++G++    + F++F DE+G FK SS + D +G+                I  +A SFT+ +L   V   D+   ++      V+HAL+
Sbjct:   21 MRPKADFQPSIWGDFFLNCPDKNIDAETQKRH-QQLKEEVRKMIVAPMANSTL----KLAFIDSVQGLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSLRFRLLREHGFHVSC-DVFNKFKDEQGNFK-SSVTSDVRGL-LELYQASYLRVHGEDILDEAISFTSNHLSLAVASLDHPLSEE------VSHALK 202          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPSD5_ABIGR (Gamma-humulene synthase OS=Abies grandis GN=ag5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 67/237 (28.27%), Postives = 102/237 (43.04%), Query Frame = 2
Query:  143 VAASTTPIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAML--QQDDKVVDLDP--LHQLELIDNLHRLGVSYHFEDEIKRTLDRIH------------NKNTNKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSS--------IFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLH 781
            ++ S +P   +  T    +++    +W  D IQSL+S Y   +Y  + EKL E++  +     DD   D D   + +LE++D +  LG+  HF+ EIK  LD ++              +  K L ATAL FR LR + YN         F D+ G F   S  ++                  +S        +  +A +FTT YL + V+      H DE L   V +ALE P H
Sbjct:    4 ISESVSPSTDLKSTESSITSNRHGNMWEDDRIQSLNSPYGAPAYQERSEKLIEEIKLLFLSDMDDSCNDSDRDLIKRLEIVDTVECLGIDRHFQPEIKLALDYVYRCWNERGIGEGSRDSLKKDLNATALGFRALRLHRYNVS-SGVLENFRDDNGQFFCGSTVEEEGAEAYNKHVRCMLSLSRASNILFPGEKVMEEAKAFTTNYLKK-VLAGREATHVDESLLGEVKYALEFPWH 238          
The following BLAST results are available for this feature:
BLAST of FC873070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CINS_ARATH3.160e-2031.781,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
MYRS2_ARATH3.494e-1932.21Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
DCS1_GOSAR2.504e-1732.65(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
DCS4_GOSAR4.271e-1733.16(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
DCS2_GOSAR9.516e-1734.12(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
DCS3_GOSAR4.723e-1636.84(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
TPSD4_ABIGR1.795e-1528.57Delta-selinene synthase OS=Abies grandis GN=ag4 PE... [more]
TPSDA_ABIGR2.344e-1535.66Limonene synthase, chloroplastic OS=Abies grandis ... [more]
DCS1_GOSHI2.344e-1531.63(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
TPSD5_ABIGR1.519e-1428.27Gamma-humulene synthase OS=Abies grandis GN=ag5 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873070 ID=FC873070; Name=FC873070; organism=Citrus clementina; type=EST; length=784bp
AATCCTTGAAATTATATTCTAAGTCATGGCTCTTAATCTGCTCTCTTCAA
TTCCTGCGGCATGCAATTTCACCAGATTATCATTACCATTATCAAGCAAA
GTTAATGGCTTTGTTCCTCCTATTACTCGAGTCCAATATCACGTGGCTGC
ATCCACCACTCCTATTAAGCCTGTCGATCAAACCATTATTAGGCGATCTG
CCGATTACGGGCCAACCATTTGGAGTTTTGATTATATTCAATCACTTGAC
AGTAAATATAAGGGAGAATCGTACGCCAGACAATTGGAAAAGCTGAAGGA
GCAAGTAAGCGCGATGCTACAGCAGGATGATAAAGTGGTGGATTTGGATC
CTTTACATCAACTTGAGCTCATCGATAATCTGCACAGACTTGGAGTATCT
TATCACTTTGAGGATGAAATAAAAAGAACTTTGGATAGGATACACAACAA
GAATACAAATAAAAGTTTATATGCCACAGCACTCAAATTTAGAATCCTAA
GGCAATATGGTTACAATACCCCTGTTAAAGAAACTTTTTCACGTTTCATG
GATGAGAAGGGGATCTTTAAGTTATCAAGCCACAGTGACGACTGCAAAGG
AATGTTAGCTCTCTATGAAGCTGCATACCTCCTGGTAGAAGAAGAAAGCA
GTATCTTTCGTGATGCGACAAGTTTCACCACCGCATATCTCANAGAATGG
GTAATCAAGCATGATAATATTAAACATGATGATGAACATCTTTGTACATT
AGTTAATCATGCTTTGGAACTTCCACTACATTGG
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