FC873070

Overview
NameFC873070
Unique NameFC873070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14818 contig Ccv1_Contig14818:11..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPSDB_ABIGR (Limonene/alpha-pinene synthase, chloroplastic OS=Abies grandis GN=ag11 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.384e-14
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  191 RRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDL-----DPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHN------------KNTNKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIF 568
            RR AD+ P +W  D+IQSL S Y G SY+ +   + E+V  M        +L     D L +L ++D++ RLG+  HF++EI+  LD +++             +T   L +TAL  R LR +GYN    +    F D+KG F
Sbjct:   70 RRIADHHPNLWEDDFIQSLSSPYGGSSYSERAVTVVEEVKEMFNSIPNNRELFGSQNDLLTRLWMVDSIERLGIDRHFQNEIRVALDYVYSYWKEKEGIGCGRDSTFPDLNSTALALRTLRLHGYNVS-SDVLEYFKDQKGHF 211          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 63/205 (30.73%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  188 IRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNK------SLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIK-HDNIKHDDEHLCTLVNHALELPLH 781
            +R  A + PT+W   +     +  + ESY  ++  LK++V  +L         D +  + LID L RLGVSYHFE++I+  L +I N   +        LY  A+ FR+ RQ+G+     + FS+F D  G FK  S   D KGM                I  +A +FT  YL    ++   N+K         + +ALE P H
Sbjct:   63 VRPLAYFPPTVWGNRFASLTFNPSEFESYDERVIVLKKKVKDILISSTS----DSVETVILIDLLCRLGVSYHFENDIEELLSKIFNSQPDLVDEKECDLYTAAIVFRVFRQHGFKMS-SDVFSKFKDSDGKFK-ESLRGDAKGM-LSLFEASHLSVHGEDILEEAFAFTKDYLQSSAVELFPNLKRH-------ITNALEQPFH 253          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 61/204 (29.90%), Postives = 99/204 (48.53%), Query Frame = 2
Query:  149 ASTTPIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKL----KEQVSAMLQQDDKVVDL--DPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHN-----------KNTNKSLYATALKFRILRQYGYNTPV-KETFSRFMDEKGIFKLSSH---SDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXE 697
            +STT +   D  + RR  D+   +W  D IQSL + Y+ +SY  + EKL    K   ++M  +D +++    D + +L ++D+L RLG+  HF+DEIK  LD +++           ++    L +TAL  R LR +GY  PV  + F  F  + G F  S +    ++ +G+                I  +A  F+T YL E
Sbjct:   52 SSTTVV--TDDGVRRRMGDFHSNLWDDDVIQSLPTAYEEKSYLERAEKLIGEVKNMFNSMSLEDGELMSPLNDLIQRLWIVDSLERLGIHRHFKDEIKSALDYVYSYWGENGIGCGRESVVTDLNSTALGLRTLRLHGY--PVSSDVFKAFKGQNGQFSCSENIQTDEEIRGV-LNLFRASLIAFPGEKIMDEAEIFSTKYLKE 250          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPS02_ARATH (Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.865e-13
Identity = 46/149 (30.87%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  359 QLELIDNLHRLGVSYHFEDEIKRTLDRIHNKN-----TNKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDN--IKHDDEHLCTLVNHALELPLHW 784
            +LE+ID+L RLG+SYH++ EI   L +IH+++       + L+AT+L+F +LRQ+G++   ++ F  F+ E G F+ + HS D KG+                + ++   +    L E+V +      + D+ ++  +V  ALE P HW
Sbjct:  109 ELEMIDSLQRLGISYHYKHEIHDILRKIHDQHGEIERETQDLHATSLEFILLRQHGFDVS-QDAFDVFISETGEFRKTLHS-DIKGLLSLYEASYFSMDSEFKL-KETRIYANKRLSEFVAESSKTICREDETYILEMVKRALETPYHW 254          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPSD8_ABIGR (Beta-phellandrene synthase, chloroplastic OS=Abies grandis GN=ag8 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 49/151 (32.45%), Postives = 75/151 (49.67%), Query Frame = 2
Query:  176 DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKL----KEQVSAMLQQDDKVVD--LDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNKSL-----------YATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLS 577
            D  + RR  DY   +W  D+IQSL + Y   SY  + EKL    KE  ++M  +D + +    D + +L ++D++ RLG+  HF+ EIK  LD +++    K +            +TA  FR LR +GY+    E    F D+ G F  S
Sbjct:   57 DDGLQRRIGDYHSNLWDDDFIQSLSTPYGEPSYRERAEKLIGEVKEMFNSMPSEDGESMSPLNDLIERLWMVDSVERLGIDRHFKKEIKSALDYVYSYWNEKGIGCGRDSVFPDVNSTASGFRTLRLHGYSVS-SEVLKVFQDQNGQFAFS 206          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPSD2_ABIGR (Myrcene synthase, chloroplastic OS=Abies grandis GN=ag2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.057e-12
Identity = 49/151 (32.45%), Postives = 75/151 (49.67%), Query Frame = 2
Query:  176 DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKL----KEQVSAMLQQDDKVVDL--DPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIH-----------NKNTNKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLS 577
            D  + RR  DY   IW  D+IQSL + Y   SY  + E+L    K+  ++M   D +++    D + +L ++D++ RLG++ HF++EI   LD +              +    L +TAL FR LR +GY T   E    F D+ G F  S
Sbjct:   59 DDGVQRRIGDYHSNIWDDDFIQSLSTPYGEPSYQERAERLIVEVKKIFNSMYLDDGRLMSSFNDLMQRLWIVDSVERLGIARHFKNEITSALDYVFRYWEENGIGCGRDSIVTDLNSTALGFRTLRLHGY-TVSPEVLKAFQDQNGQFVCS 208          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPSD9_ABIGR (Terpinolene synthase, chloroplastic OS=Abies grandis GN=ag9 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 44/145 (30.34%), Postives = 75/145 (51.72%), Query Frame = 2
Query:  176 DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQ----QDDKVVDL--DPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNK-----------SLYATALKFRILRQYGYNTPVKETFSRFMDEK 559
            D  + RR  ++   +W  D+IQSL + Y   SY  + ++L  +V  +      +D +++    D + +L ++DN+ RLG+  HF++EIK  LD +++    K            L +TAL FRILR +GY+    +    F +EK
Sbjct:   60 DHGVQRRIVEFHSNLWDDDFIQSLSTPYGAPSYRERADRLIVEVKGIFTSISAEDGELITPLNDLIQRLLMVDNVERLGIDRHFKNEIKAALDYVYSYWNEKGIGSGSDSGVADLNSTALGFRILRLHGYSVS-SDVLEHFKEEK 203          
The following BLAST results are available for this feature:
BLAST of FC873070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
TPSDB_ABIGR3.384e-1434.27Limonene/alpha-pinene synthase, chloroplastic OS=A... [more]
CASS_RICCO4.420e-1430.73Casbene synthase, chloroplastic OS=Ricinus communi... [more]
TPSD3_ABIGR1.286e-1329.90Pinene synthase, chloroplastic OS=Abies grandis GN... [more]
TPS02_ARATH2.865e-1330.87Probable terpenoid synthase 2, chloroplastic OS=Ar... [more]
TPSD8_ABIGR1.089e-1232.45Beta-phellandrene synthase, chloroplastic OS=Abies... [more]
TPSD2_ABIGR7.057e-1232.45Myrcene synthase, chloroplastic OS=Abies grandis G... [more]
TPSD9_ABIGR9.217e-1230.34Terpinolene synthase, chloroplastic OS=Abies grand... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873070 ID=FC873070; Name=FC873070; organism=Citrus clementina; type=EST; length=784bp
AATCCTTGAAATTATATTCTAAGTCATGGCTCTTAATCTGCTCTCTTCAA
TTCCTGCGGCATGCAATTTCACCAGATTATCATTACCATTATCAAGCAAA
GTTAATGGCTTTGTTCCTCCTATTACTCGAGTCCAATATCACGTGGCTGC
ATCCACCACTCCTATTAAGCCTGTCGATCAAACCATTATTAGGCGATCTG
CCGATTACGGGCCAACCATTTGGAGTTTTGATTATATTCAATCACTTGAC
AGTAAATATAAGGGAGAATCGTACGCCAGACAATTGGAAAAGCTGAAGGA
GCAAGTAAGCGCGATGCTACAGCAGGATGATAAAGTGGTGGATTTGGATC
CTTTACATCAACTTGAGCTCATCGATAATCTGCACAGACTTGGAGTATCT
TATCACTTTGAGGATGAAATAAAAAGAACTTTGGATAGGATACACAACAA
GAATACAAATAAAAGTTTATATGCCACAGCACTCAAATTTAGAATCCTAA
GGCAATATGGTTACAATACCCCTGTTAAAGAAACTTTTTCACGTTTCATG
GATGAGAAGGGGATCTTTAAGTTATCAAGCCACAGTGACGACTGCAAAGG
AATGTTAGCTCTCTATGAAGCTGCATACCTCCTGGTAGAAGAAGAAAGCA
GTATCTTTCGTGATGCGACAAGTTTCACCACCGCATATCTCANAGAATGG
GTAATCAAGCATGATAATATTAAACATGATGATGAACATCTTTGTACATT
AGTTAATCATGCTTTGGAACTTCCACTACATTGG
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