FC873072

Overview
NameFC873072
Unique NameFC873072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5656 contig Ccv1_Contig5656:346..1092. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC873072 vs. ExPASy Swiss-Prot
Match: DUT_RICM5 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rickettsia massiliae (strain Mtu5) GN=dut PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  129 LRVKKLSE-KAVLPKRGSPLAAGYDLSSAAETKVPARGKA--LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++KKL      LP+  +  +AG DL +A E  +  +  A  L+PT ++IA+P+   A+I PRSGLA KH + V    G IDADYRG + VIL N    DF+++ G RIAQ+II K       E  +L  T+RG GGFGSTGV
Sbjct:    6 VKIKKLENFSGSLPEYATEHSAGMDLIAANEQPITIKAGAIQLIPTGIAIALPDSFEAQIRPRSGLAVKHGITVANSPGTIDADYRGEIKVILINLGKEDFIIEKGMRIAQMIIAKYERILWEESSSLMETMRGSGGFGSTGV 148          
BLAST of FC873072 vs. ExPASy Swiss-Prot
Match: DUT_MARMM (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Maricaulis maris (strain MCS10) GN=dut PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22
Identity = 65/146 (44.52%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  129 LRVKKLS--EKAVLPKRGSPLAAGYDLSSAAET----KVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEV-ENLDSTVRGEGGFGSTG 539
            +++K L   E   LP   +P +AG DL +A        +P     L+P  ++IA+P G  A++ PRSGLA KH +      G +DADYRG + V L NH   +FVV  GDRIAQ+II   VT  V E+ + LD T RG GGFGSTG
Sbjct:    6 VKIKPLDHYEGLALPAYETPQSAGMDLRAAVPADEPVSIPPGEWRLIPVGIAIALPAGFEAQVRPRSGLAAKHGISCVNTPGTVDADYRGEIRVNLINHGQANFVVNRGDRIAQMIIAP-VTQAVWEIADTLDETTRGTGGFGSTG 150          
BLAST of FC873072 vs. ExPASy Swiss-Prot
Match: DUT_HYDS0 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=dut PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPAR-GKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            L VKKL E A LP   +  A+G DL    +  V     + LV T ++I +PEG  A+I PRSGLA K  + V    G ID DYRG + VIL N SD + +++ G+RIAQ++I  ++  +V+E + L +T R +GGFGSTG+
Sbjct:    3 LLVKKLREDAALPFYATSGASGLDLFCVDDVVVIRPFERVLVSTGIAIELPEGYEAQIRPRSGLALKKGVTVLNSPGTIDHDYRGEIKVILINLSDKEVIIEKGERIAQMVIVPVLKVEVVEAKELSNTQRQDGGFGSTGM 143          
BLAST of FC873072 vs. ExPASy Swiss-Prot
Match: DUT_GEOSM (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Geobacter sp. (strain M21) GN=dut PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22
Identity = 62/141 (43.97%), Postives = 84/141 (59.57%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDL--SSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            +R+K+L     LP   +  AAG DL  S +A+  +    +ALVPT L+I +P G  A++ PRSGLA +H + +    G IDADYRG +GVIL N     F V  G+RIAQ++  +    + +EVE L  T RG GGFG TG
Sbjct:    6 VRIKRL-RATPLPGYMTEHAAGVDLCASLSADFVLSPGERALVPTGLAIELPPGFEAQVRPRSGLALRHGIALVNSPGTIDADYRGEIGVILINLGSAPFTVSDGERIAQMVFARCERAEFIEVEELGDTARGAGGFGHTG 145          
BLAST of FC873072 vs. ExPASy Swiss-Prot
Match: DUT_BEII9 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dut PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22
Identity = 64/143 (44.76%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  135 VKKLS--EKAVLPKRGSPLAAGYDLSSA----AETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            VK+L+  E   LP   +  AAG DL++A        +   G+ L+PT   + IPEG  A++ PRSGLA KH + V    G IDADYRG +GVIL N  D  F +  G RIAQL++   V  +++E   L  T RGE GFGSTG
Sbjct:   13 VKRLAHAEGLALPAYQTAGAAGLDLAAALPHGTTLVLEPGGRHLLPTGFCLEIPEGYEAQVRPRSGLARKHGVTVLNTPGTIDADYRGEIGVILINMGDEPFEIVRGTRIAQLVVAPCVQAELIETHTLSDTERGEDGFGSTG 155          
BLAST of FC873072 vs. ExPASy Swiss-Prot
Match: DUT_TRIEI (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Trichodesmium erythraeum (strain IMS101) GN=dut PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            L++KKL E A++P       AG DL S  E+ +      L+ T +SI +P GT A+I PRSGLA KH + V    G ID  YRG +G+IL NH    F V    +IAQ++I  +++  V EV  L +T R   GFGSTG
Sbjct:    3 LKIKKLDELAIIPFYAHKGDAGLDLFSIDESTINPGESKLIHTGISIELPSGTEAQIRPRSGLALKHQITVLNTPGTIDETYRGEIGIILINHGKNSFQVTKRMKIAQMVITSVLSVKVEEVNQLSTTQRDINGFGSTG 141          
BLAST of FC873072 vs. ExPASy Swiss-Prot
Match: DUT_RHOSK (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=dut PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 63/125 (50.40%), Postives = 75/125 (60.00%), Query Frame = 3
Query:  174 GSPLAAGYDLSSAAETKVPAR-GKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            G+ L A     S AE  V A  G+ LVPT L I IPEG   +I PRSGLA KH + +    G ID+DYRGP+GVIL N     F V  GDRIAQ+++  +V      VE L +T RG GGFGSTG
Sbjct:   29 GADLRANLPPESRAEGLVLAPLGRVLVPTGLRIEIPEGFEVQIRPRSGLALKHGISLPNSPGTIDSDYRGPLGVILVNLGAEPFRVAHGDRIAQMVVAPVVQAGFELVEGLGATARGAGGFGSTG 153          
BLAST of FC873072 vs. ExPASy Swiss-Prot
Match: DUT_OLICO (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=dut PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  162 LPKRGSPLAAGYDLSSAAETKVP---ARG-KALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            LP   +  AAG DL +A     P   A G +ALVPT L+IA+P G  A++ PRSGLA KH + V    G IDADYRG +GV L NH    F+++ G+RIAQ+++  +V      V  L  + RG GGFGSTG
Sbjct:   20 LPAYQTEHAAGLDLLAAVPEDKPLAIAPGERALVPTGLAIALPAGYEAQVRPRSGLAVKHGVTVLNAPGTIDADYRGEIGVPLINHGRETFIIRRGERIAQMVVAPVVQIAFEPVAELPMSARGAGGFGSTG 151          
BLAST of FC873072 vs. ExPASy Swiss-Prot
Match: DUT_GEOBB (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=dut PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 64/146 (43.84%), Postives = 88/146 (60.27%), Query Frame = 3
Query:  117 IGSL-LRVKKLSEKAVLPKRGSPLAAGYDL--SSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            +GSL +R+K+L     LP   +  AAG DL  S +A+  +    +ALVPT L+I +P G  A++ PRSGLA +H + +    G IDADYRG +GVIL N     F V  G+RIAQ++  +    + +EV+ L  T RG GGFG TG
Sbjct:    1 MGSLPVRIKRL-RATPLPAYMTEHAAGVDLCASLSADFVLAPGERALVPTGLAIELPPGFEAQVRPRSGLALRHGIALVNSPGTIDADYRGEIGVILINLGSEPFTVSDGERIAQMVFARCERAEFIEVDELGDTARGAGGFGHTG 145          
BLAST of FC873072 vs. ExPASy Swiss-Prot
Match: DUT_CHLPD (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dut PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARG--KALVPTDLSIAIPEGTYARIAPRSGLAWKH--SMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++ +L+EKA+LP   +  AAG D+++  E  V       AL+P+  +I +PEG  A++ PRSGLA +H  S+      IDADYRG V +IL N+    FVV  GDR+AQ+++ K+      EV  L S+ R +GGFG TG+
Sbjct:    4 VKIVRLNEKALLPVYATTHAAGMDVAACLEENVVVLPFETALIPSGFAIELPEGYEAQLRPRSGLALRHLISLPNTPATIDADYRGEVKIILINYGQEPFVVHHGDRVAQMVVAKVERVFFDEVLTLASSSRADGGFGHTGI 145          
The following BLAST results are available for this feature:
BLAST of FC873072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DUT_RICM56.933e-2244.76Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_MARMM6.933e-2244.52Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_HYDS06.933e-2243.97Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_GEOSM6.933e-2243.97Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_BEII96.933e-2244.76Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_TRIEI9.055e-2243.17Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RHOSK9.055e-2250.40Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_OLICO9.055e-2246.97Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_GEOBB9.055e-2243.84Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CHLPD9.055e-2241.55Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC08FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873072 ID=FC873072; Name=FC873072; organism=Citrus clementina; type=EST; length=747bp
CACTAAAGCTTGTTTTCAAAATGGCCCCAGCAGTTCAGCAAAATGGCAGC
CCAGAAGTCAAAGAGCCTTCTCCAAAGATCCCAAAACTACACCAGAACGG
CGTCGAAAATGACAACATAGGCTCTCTCTTGAGAGTTAAAAAGCTCTCCG
AAAAGGCTGTTTTGCCCAAAAGAGGCTCCCCTCTTGCCGCTGGCTACGAT
CTCTCCAGTGCTGCGGAGACTAAGGTGCCAGCAAGGGGAAAAGCTCTTGT
TCCAACAGATCTGAGCATCGCAATACCCGAAGGAACATATGCACGTATTG
CGCCAAGATCGGGACTGGCGTGGAAGCACTCAATGGACGTGGGAGCCGGG
GTGATTGATGCGGATTACAGGGGCCCTGTTGGGGTGATTTTGTTTAATCA
TTCTGATGTTGATTTTGTGGTGAAAGTGGGTGATAGAATTGCTCAATTAA
TAATTGAGAAAATCGTGACTCCTGATGTGTTGGAGGTTGAGAACTTGGAC
TCTACTGTCAGAGGAGAAGGTGGTTTTGGCTCTACTGGGGTTTGAATTTC
TTTGTTGAAGACTATGCGTTGTTGCATATGTTTTGTTTTTATGGTAATGT
TAGTTCAGGTCTCTGGGTAGTTTTGTCGGGCAGCTGGTGTACAGGCTATT
GGCTTGTTTTGCTGTCTTGATTTGTAAACAACTTGGTAAGTAGTATTGGC
ATGGAAGAAATGGCATGTATCCTCTTGTTGTTTCTATCTATATTACA
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