FC873076

Overview
NameFC873076
Unique NameFC873076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.526e-22
Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYLFK++LIGDS VGKS LL RF+ D +  +  STIGV+F+ + ++ +GK +K QIWDTAGQERFR +TS+YYRGA G ++VY
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.526e-22
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            S ED   D+LFK++LIGDS VGK+ ++ RF    F  N ++TIGV+F  + ++INGK+VK Q+WDTAGQERFR +T +YYR A GA++ Y
Sbjct:    6 SLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAY 95          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.993e-22
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYL K++LIGDS VGKS LL RF+   F  +  +TIG++F+ + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G LLVY
Sbjct:   13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.993e-22
Identity = 50/86 (58.14%), Postives = 68/86 (79.07%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            R  D+LFK+++IGDS VGKS+LL RFA + F  +  +TIGV+F+ + ++ING++VK QIWDTAGQERFR +TS YYRG  G ++VY
Sbjct:    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.993e-22
Identity = 50/86 (58.14%), Postives = 68/86 (79.07%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            R  D+LFK+++IGDS VGKS+LL RFA + F  +  +TIGV+F+ + ++ING++VK QIWDTAGQERFR +TS YYRG  G ++VY
Sbjct:    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.993e-22
Identity = 50/86 (58.14%), Postives = 68/86 (79.07%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            R  D+LFK+++IGDS VGKS+LL RFA + F  +  +TIGV+F+ + ++ING++VK QIWDTAGQERFR +TS YYRG  G ++VY
Sbjct:    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.993e-22
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYL K++LIGDS VGKS LL RF+   F  +  +TIG++F+ + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G LLVY
Sbjct:   13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.440e-22
Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQER R +TS+YYRGA G ++VY
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.799e-22
Identity = 49/83 (59.04%), Postives = 67/83 (80.72%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYLFK++LIG+S VGKS LL RF+ D +  +  STIGV+F+ + ++++GK VK QIWDTAGQERFR +TS+YYRG+ G ++VY
Sbjct:    6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            Y+FK ++IGD  VGKS LL +F   +F  +   TIGVEF T+ ++++G+++K QIWDTAGQERFRAVT +YYRGA GAL+VY
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 91          
The following BLAST results are available for this feature:
BLAST of FC873076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
RBD2A_ARATH1.526e-2260.24Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB19_XENLA1.526e-2254.44Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RB1BV_BETVU1.993e-2259.04Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB35_RAT1.993e-2258.14Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE1.993e-2258.14Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN1.993e-2258.14Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
ARA3_ARATH1.993e-2259.04Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB1B_PIG4.440e-2260.24Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_YEAST5.799e-2259.04GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB14_RAT7.574e-2258.54Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873076 ID=FC873076; Name=FC873076; organism=Citrus clementina; type=EST; length=789bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGA
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