FC873076

Overview
NameFC873076
Unique NameFC873076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 45/87 (51.72%), Postives = 68/87 (78.16%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+Y
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 102          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 45/87 (51.72%), Postives = 68/87 (78.16%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+Y
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 102          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 45/87 (51.72%), Postives = 68/87 (78.16%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+Y
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 102          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 45/87 (51.72%), Postives = 68/87 (78.16%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+Y
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 102          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 45/87 (51.72%), Postives = 68/87 (78.16%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+Y
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 102          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 45/87 (51.72%), Postives = 68/87 (78.16%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+Y
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 102          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.687e-21
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVY
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.687e-21
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVY
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.687e-21
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVY
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.687e-21
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVY
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86          
The following BLAST results are available for this feature:
BLAST of FC873076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
RAB3A_RAT1.292e-2151.72Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG1.292e-2151.72Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE1.292e-2151.72Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA1.292e-2151.72Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN1.292e-2151.72Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN1.292e-2151.72Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB2_LYMST1.687e-2159.76Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RABIT1.687e-2159.76Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB1.687e-2159.76Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE1.687e-2159.76Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873076 ID=FC873076; Name=FC873076; organism=Citrus clementina; type=EST; length=789bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGA
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