FC873076

Overview
NameFC873076
Unique NameFC873076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.007e-31
Identity = 70/94 (74.47%), Postives = 79/94 (84.04%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            MA Y  ED   DYLFKVVLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+ + ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    1 MAGYRVEDDY-DYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.233e-31
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:   10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.233e-31
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D   DYLFK+VLIGDS VGKSN+L+RF R+EF   SKSTIGVEF T+ + + GK VKAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.233e-31
Identity = 67/91 (73.63%), Postives = 78/91 (85.71%), Query Frame = 2
Query:  515 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            Y +  +  DY+FKVVLIGDSAVGKS +LARFAR+EF  +SK+TIGVEFQT+ + I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA+LVY
Sbjct:    5 YGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.233e-31
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D   DYLFK+VLIGDS VGKSN+L+RF R+EF   SKSTIGVEF T+ + + GK VKAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 8.926e-31
Identity = 66/92 (71.74%), Postives = 79/92 (85.87%), Query Frame = 2
Query:  518 SEEDRAEDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            S ED   DY  LFK+VLIGDS VGKSNLL+RF ++EF  +SKSTIGVEF T+ ++I+GK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VY
Sbjct:    2 SSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVY 93          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 133.65 bits (335), Expect = 1.166e-30
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D+  DYLFK+VLIGDS VGKSN+L+RF R+EF   SKSTIGVEF T+   + GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.166e-30
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + + G+ VKAQIWDTAGQER+RA+TSAYYRGA+GALLVY
Sbjct:    6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVY 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.523e-30
Identity = 66/91 (72.53%), Postives = 78/91 (85.71%), Query Frame = 2
Query:  515 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            Y +  +  DY+FKVVLIGDSAVGK+ +LARFAR+EF  +SK+TIGVEFQT+ + I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA+LVY
Sbjct:    5 YGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.523e-30
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            MA Y  +D   DYLFKVVLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+ ++++ K +KAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    1 MAGYRADDEY-DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93          
The following BLAST results are available for this feature:
BLAST of FC873076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
RAA1B_ARATH4.007e-3174.47Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE5.233e-3178.31Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB2BV_BETVU5.233e-3174.71Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11D_TOBAC5.233e-3173.63Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_LOTJA5.233e-3174.71Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
YPT31_YEAST8.926e-3171.74GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RAA2C_ARATH1.166e-3073.56Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RAA2A_ARATH1.166e-3074.71Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11C_TOBAC1.523e-3072.53Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAA1C_ARATH1.523e-3071.28Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873076 ID=FC873076; Name=FC873076; organism=Citrus clementina; type=EST; length=789bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGA
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