FC873076

Overview
NameFC873076
Unique NameFC873076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.285e-25
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D   +++FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQIWDTAG ER+RA+TSAYYRGAVGALLV+
Sbjct:    6 DEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVF 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.285e-25
Identity = 58/90 (64.44%), Postives = 75/90 (83.33%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            +EED   +++FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQIWDTAG ER+RA+TSAYYRGAVGALLV+
Sbjct:    5 TEEDY--NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVF 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 58/88 (65.91%), Postives = 73/88 (82.95%), Query Frame = 2
Query:  530 RAEDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            + EDY  +FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQIWDTAG ER+RA+TSAYYRGAVGALLV+
Sbjct:    5 KEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVF 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 57/90 (63.33%), Postives = 75/90 (83.33%), Query Frame = 2
Query:  527 DRAED---YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            +RAE+   ++FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    +KAQIWDTAG ER+RA+TSAYYRGAVGALLV+
Sbjct:    3 NRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVF 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.604e-25
Identity = 53/95 (55.79%), Postives = 72/95 (75.79%), Query Frame = 2
Query:  503 KMAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            K  F   +  + ++LFK +++GDSAVGKSNLL +F    F PNS  TIGVEF ++ ++IN K++K QIWDTAGQE+FR++T AYYRGAV A++VY
Sbjct:   10 KPTFNDRKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVY 104          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            +Y+FK ++IGD  VGKS LL +F  ++F P+S  TIGVEF T+ +D+N K++K QIWDTAGQERFRAVT +YYRGA GALLVY
Sbjct:    6 EYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.559e-25
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            S   ++ D + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DINGK+VK Q+WDTAGQERFR +T+AYYRGA+G +LVY
Sbjct:   11 SGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVY 100          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.559e-25
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            S   ++ D + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DINGK+VK Q+WDTAGQERFR +T+AYYRGA+G +LVY
Sbjct:   11 SGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVY 100          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.248e-24
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            + +  A DYL K++LIGDS VGKS LL RF+ D F P+  +TIG++F+ + +++ GK +K QIWDTAGQERFR +T+AYYRGA+G LLVY
Sbjct:    6 TNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.632e-24
Identity = 50/86 (58.14%), Postives = 70/86 (81.40%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            ++ DYL K++LIGDS VGKS LL RF+ D F P+  +TIG++F+ + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G LL+Y
Sbjct:    4 KSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLY 89          
The following BLAST results are available for this feature:
BLAST of FC873076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
RAB25_MOUSE3.285e-2564.37Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_HUMAN3.285e-2564.44Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_RABIT4.291e-2565.91Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB25_BOVIN4.291e-2563.33Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RAB2B_DICDI5.604e-2555.79Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB14_DICDI7.319e-2563.86Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
SEC4_YEAST9.559e-2557.78Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
SEC4_CANGA9.559e-2557.78Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB8A_DICDI1.248e-2457.78Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
YPT2_SCHPO3.632e-2458.14GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873076 ID=FC873076; Name=FC873076; organism=Citrus clementina; type=EST; length=789bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGA
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