FC873076

Overview
NameFC873076
Unique NameFC873076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.196e-24
Identity = 50/86 (58.14%), Postives = 68/86 (79.07%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            +A D+LFK++LIGDS VGK+ L+ RFA D F     STIG++F+ + +DI GK +K Q+WDTAGQERF+ +T+AYYRGA+G +LVY
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.196e-24
Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            +A D+LFK++LIGDS VGK+ L+ RFA D F     STIG++F+ + +DI GK++K Q+WDTAGQERF+ +T+AYYRGA+G +LVY
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.196e-24
Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            +A D+LFK++LIGDS VGK+ L+ RFA D F     STIG++F+ + +DI GK++K Q+WDTAGQERF+ +T+AYYRGA+G +LVY
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.092e-24
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            S   R  D L K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DI  + VK Q+WDTAGQERFR +T+AYYRGA+G LLVY
Sbjct:    2 SHSQRTYDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVY 91          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.057e-23
Identity = 50/83 (60.24%), Postives = 68/83 (81.93%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYLFK++LIGDS VGK+ LL RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERFR +T+AYYRGA+G +LVY
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.057e-23
Identity = 50/83 (60.24%), Postives = 68/83 (81.93%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYLFK++LIGDS VGK+ LL RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERFR +T+AYYRGA+G +LVY
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.057e-23
Identity = 50/83 (60.24%), Postives = 68/83 (81.93%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYLFK++LIGDS VGK+ LL RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERFR +T+AYYRGA+G +LVY
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.057e-23
Identity = 50/83 (60.24%), Postives = 68/83 (81.93%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYLFK++LIGDS VGK+ LL RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERFR +T+AYYRGA+G +LVY
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.057e-23
Identity = 50/83 (60.24%), Postives = 68/83 (81.93%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            DYLFK++LIGDS VGK+ LL RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERFR +T+AYYRGA+G +LVY
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVY 88          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.803e-23
Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            +A D+LFK++LIGDS VGK+ L+ RFA D F     STIG++F+ + ++I GK +K Q+WDTAGQERF+ +T+AYYRGA+G +LVY
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVY 88          
The following BLAST results are available for this feature:
BLAST of FC873076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
RAB13_MOUSE6.196e-2458.14Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB13_HUMAN6.196e-2458.14Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN6.196e-2458.14Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RYL1_YARLI8.092e-2457.78Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB8B_RAT1.057e-2360.24Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB1.057e-2360.24Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE1.057e-2360.24Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN1.057e-2360.24Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8B_BOVIN1.057e-2360.24Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB13_RAT1.803e-2356.98Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873076 ID=FC873076; Name=FC873076; organism=Citrus clementina; type=EST; length=789bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGA
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