FC873083

Overview
NameFC873083
Unique NameFC873083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_THEVO (Replication factor C small subunit OS=Thermoplasma volcanium GN=rfcS PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.526e-42
Identity = 89/270 (32.96%), Postives = 160/270 (59.26%), Query Frame = 3
Query:    3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAI 812
            T +A+A +L+G  +    +E+N+S++ GIDV+R +I+D A  +  +       K++ LDEAD +T +AQ ALRR +E Y++ TRF   CN  +KIIP +QSR    RF P++   + ++L  + + EG  + +  + A+V +  GDMRKA+N+LQ+ +  S +I+ + +Y   G   P+ + ++    +N  F ++ + + +M +  GL+ +DIV+ V   V    +P   ++ ++  LAD E+R+  G ND++QL+++I+      S I
Sbjct:   52 TAIALAIELFGESWKENFIEMNASNENGIDVIRNKIKDIARIRPSN---PLGFKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPESVNKLISRAINGLFDEARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSNDRIQLDALIARIADIGSKI 317          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_METLZ (Replication factor C small subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.526e-42
Identity = 90/265 (33.96%), Postives = 158/265 (59.62%), Query Frame = 3
Query:    9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQA 800
            +A+AR+++G  ++    ELN+SD+RGIDVVR QI+ FA T        A+ K++ LDEADA+T+DAQ ALRR +E Y +  RF L CN  +KII  +QSRC  +RF PL    ++E +  + + EG+ + EG   A+  +  GDMRKA+N LQ   + S  +T E +Y  T N  P++I  +    L   F  + + +  +   KG+A  +++ ++   + + + +   ++V L++ L + ++R+S G +  +Q++++++   ++
Sbjct:   57 VALAREMFGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLG---DATFKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSNAKPQEITDLLARCLEGDFETAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEADFRMSEGADADIQMDALLARIVRS 318          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_SULSO (Replication factor C small subunit OS=Sulfolobus solfataricus GN=rfcS PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.742e-41
Identity = 98/261 (37.55%), Postives = 158/261 (60.54%), Query Frame = 3
Query:    9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFV--FKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785
            LA+   LYG  Y    LELN+SD+RGIDV+R ++++FA T           K+VLLDEAD MT DAQ ALRR +E YT+NTRF L CN ++KII  +QSR   FRF PL+   V  RL ++ + E  +  +  L  +  +  GDMRK++NILQ+   A  +I+ EAV+   G   PK++ ++    L   F  +  ++  + +  GL+  DIV+++   +   +I++  ++RV L++ + + E+R+  G +D++QL ++++
Sbjct:   59 LALVHDLYGDNYTEYFLELNASDERGIDVIRNKVKEFARTV---IPGDIPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMINLALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGADDEIQLSALLA 315          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_THEAC (Replication factor C small subunit OS=Thermoplasma acidophilum GN=rfcS PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.109e-41
Identity = 90/268 (33.58%), Postives = 162/268 (60.45%), Query Frame = 3
Query:    3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARS 806
            T +A+A +L+G  +   ++E+N+S++ GIDV+R +I+D A  +  +       K++ LDEAD +T +AQ ALRR +E Y++ TRF   CN  +KIIP +QSR    RF P+   +++ +L+ + + EG  + E  + ALV +  GDMRKA+N+LQ+ +  S +I+ + +Y   G   P+ I+++    +N  F ++ + +  M +  GL+ +DIVR +  +V    +    ++ ++  LAD E+R+  G ND++QL+++I+   +  S
Sbjct:   52 TAIALAIELFGDSWKENMVEMNASNENGIDVIRNKIKDIARIKPSN---PLGFKILFLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPEKIQKMISRAINGLFDEAREIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSNDRIQLDALIAKLAEIGS 315          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_METKA (Replication factor C small subunit OS=Methanopyrus kandleri GN=rfcS PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.979e-41
Identity = 86/242 (35.54%), Postives = 152/242 (62.81%), Query Frame = 3
Query:   63 LNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785
            L++SD+RGIDV+R ++++FA T+       A  K++ LDEAD +T+D+Q ALRR++E Y+   RF L  N  + II  +QSRC  F+F  L    + ERL+ + E+EG+++TE  L A+V +  GDMR+A+N+LQ+     ++I E+ V+       P+++ ++ +   N  F  + + + E+  R G++  D+VR+V   +F + ++P +    L+N + D EYRL  G ++++QLE++++
Sbjct:  385 LHNSDERGIDVIRTKVKNFARTRPMG---GARFKIIFLDEADNLTRDSQQALRRIMEMYSDACRFILAANYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEITEDALDAIVYVSEGDMRRAINVLQAAAALGREIDEDTVFQIAATARPEEVREMIHHAWNGDFERARELLHELLTRYGMSGEDVVRQVHREIFDMDEIPEEAIPELVNAVGDFEYRLIRGSDERIQLEALLA 623          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_METBF (Replication factor C small subunit OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.322e-40
Identity = 95/272 (34.93%), Postives = 159/272 (58.46%), Query Frame = 3
Query:    9 LAVARKLYGAQ-YHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA--SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV--------TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTF 791
            +++AR+++G   +     ELN+SD+RGIDVVR +I++FA T        A  K++ LDEADA+T DAQ ALRR +E+++ N RF L CN  ++II  +QSRC  FRF  L    + +RL+++ + + L +TE G  ALV +  GDMRKA+N LQ+      ++ I+   +Y  T    P+DI  +    L  +F  + K ++ +   +GL+  DIV ++           +  + +     V L++ + +I++RL+ G  +K+QLE++++ F
Sbjct:   60 VSIAREIFGEDLWRENFTELNASDERGIDVVRTKIKNFAKTAPMG---GAEFKIIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLIETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIGEIDFRLTEGATEKIQLEALLAHF 328          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_PICTO (Replication factor C small subunit OS=Picrophilus torridus GN=rfcS PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.032e-40
Identity = 87/270 (32.22%), Postives = 160/270 (59.26%), Query Frame = 3
Query:    3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAI 812
            T +A+  +L+G  +    LELN+SD+RGID++R  I+DFA  +  +   K   K++ LDEAD +T +AQ ALRR +E +   TRF   CN  +KIIP +QSRC   RF PL+   +  +L+ + + E  D+ +  L A+  + +GDMRKA+N++Q+   ++ +I    +Y  +G     + + +    LN +F+D+   + +M +  GL+ +DI+R +   +   ++ +  ++ ++  LA+ E+R+S G +D +Q++++++  +   S I
Sbjct:   52 TAIALTIELFGDDWKENFLELNASDERGIDIIRNNIKDFAKIRPSN---KLGFKIIFLDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDDDSLDAIYEISDGDMRKAINVMQAI-QSTGEIKPSKIYEISGEINKNEYKNLISLSLNGAFSDAKSLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDNVQMDALLARISYIGSEI 317          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRIL (Replication factor C small subunit 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.172e-40
Identity = 92/254 (36.22%), Postives = 145/254 (57.09%), Query Frame = 3
Query:    9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 770
            L +AR+LYG  +    LELN+SD+RGI+V+R+++++FA T       KA  KLV+LDEAD MT DAQ ALRR++E Y +NTRF L+ N ++ II  +QSR    RF PL    V  RL+++ E EG+ +++  L  +     GDMRKA+N LQ      ++ITE+ V    G   P+ + +     L  +F+ +  +I    +  G+  ++I+R++   V ++ +P  V+  L   +A+  Y    G     Q+
Sbjct:   55 LVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISDDALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSPRLLRETLQEALKGNFSKAMTQIYGFVVDGGVGELEIIRQIHREVLRLDVPEYVKPELAYIIAEAHYATLRGARGLTQI 305          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRAE (Replication factor C small subunit 2 OS=Pyrobaculum aerophilum GN=rfcS2 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.822e-40
Identity = 92/254 (36.22%), Postives = 147/254 (57.87%), Query Frame = 3
Query:    9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 770
            L +AR+LYG  +    LELN+SD+RGI+V+R+++++FA T       KA  KLV+LDEAD MT DAQ ALRR++E Y +NTRF L+ N V+ II  +QSR    RF+PL    V  RL+++ E EG+ V++  L A+     GDMR+A+N LQ     S+ +TEE V    G   P+ + +  Y  +  SF  +  +I       G+  ++I++++   + ++ +   V+  +   +A+  Y +  G +   Q+
Sbjct:   55 LVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSDDALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPRLLRETLYEAVKGSFGKAATQIYGFVADGGVGELEIIKQIHREMLRLDVQEYVKPEIAYIIAEAHYAILRGAHGLTQI 305          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_CHICK (Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.352e-39
Identity = 94/273 (34.43%), Postives = 154/273 (56.41%), Query Frame = 3
Query:    3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAA 821
            +IL +AR L G    + +LELN+S+DRGIDVVR +I+ FA  +      K   K+++LDEAD+MT  AQ ALRR +E Y+K TRFAL CN  +KII  +QSRC   R+  L    +  RL  ++E E +  T+ GL A++    GDMR+ALN LQST+     I  E V+     P P  ++++    +N +  +++K ++ +  R G +  D++  +       +MP  +++  + ++     +++ G N  LQ+  +++   Q  +A  A+
Sbjct:   90 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL--PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHL-WRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAAPAAS 359          
The following BLAST results are available for this feature:
BLAST of FC873083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RFCS_THEVO5.526e-4232.96Replication factor C small subunit OS=Thermoplasma... [more]
RFCS_METLZ5.526e-4233.96Replication factor C small subunit OS=Methanocorpu... [more]
RFCS_SULSO2.742e-4137.55Replication factor C small subunit OS=Sulfolobus s... [more]
RFCS_THEAC6.109e-4133.58Replication factor C small subunit OS=Thermoplasma... [more]
RFCS_METKA7.979e-4135.54Replication factor C small subunit OS=Methanopyrus... [more]
RFCS_METBF2.322e-4034.93Replication factor C small subunit OS=Methanosarci... [more]
RFCS_PICTO3.032e-4032.22Replication factor C small subunit OS=Picrophilus ... [more]
RFCS2_PYRIL5.172e-4036.22Replication factor C small subunit 2 OS=Pyrobaculu... [more]
RFCS2_PYRAE8.822e-4036.22Replication factor C small subunit 2 OS=Pyrobaculu... [more]
RFC2_CHICK3.352e-3934.43Replication factor C subunit 2 OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873083 ID=FC873083; Name=FC873083; organism=Citrus clementina; type=EST; length=832bp
CTACCATTCTTGCTGTTGCACGGAAGCTTTATGGAGCACAATATCACAAT
ATGATTCTGGAGCTGAATTCGTCTGATGATAGAGGAATTGACGTTGTGCG
GCAACAGATCCAAGATTTTGCTAGCACTCAAAGCTTCTCATTTGGTGTAA
AGGCATCAGTCAAGCTGGTCTTGCTTGATGAGGCTGATGCCATGACAAAG
GATGCTCAGTTTGCCTTGCGTAGAGTGATTGAGAAATACACGAAGAACAC
TAGGTTTGCGCTTATCTGTAATCAGGTCAACAAGATTATTCCAGCACTGC
AGTCTAGATGTACCAGATTCCGATTTGCTCCTCTTGAACCTGTTCATGTG
ACTGAGCGTCTCAAACATGTAATAGAGGCTGAAGGCCTTGATGTAACCGA
GGGTGGCTTGGCAGCGCTTGTACGGCTTTGCAATGGTGATATGAGAAAGG
CCTTGAACATTTTGCAGTCAACACATATGGCGTCTCAGCAAATTACAGAA
GAAGCTGTATACTTGTGCACTGGAAACCCTTTGCCCAAGGACATTGAGCA
AATATCTTACTGGCTTCTGAACGAATCATTTGCGGATAGTTTCAAGCGAA
TATCTGAAATGAAAATGAGGAAAGGATTGGCGTTGGTAGATATTGTGAGG
GAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCATCGGATGTTCGAGT
CCGGCTAATGAATGATTTGGCTGACATAGAGTATAGGTTGAGTTTTGGAT
GCAATGATAAGTTACAGCTTGAATCAATCATTTCTACTTTCACGCAAGCT
CGATCTGCTATTGTTGCTGCTGCAAAATAGAT
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