FC873083
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_THEVO (Replication factor C small subunit OS=Thermoplasma volcanium GN=rfcS PE=3 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 5.526e-42 Identity = 89/270 (32.96%), Postives = 160/270 (59.26%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAI 812 T +A+A +L+G + +E+N+S++ GIDV+R +I+D A + + K++ LDEAD +T +AQ ALRR +E Y++ TRF CN +KIIP +QSR RF P++ + ++L + + EG + + + A+V + GDMRKA+N+LQ+ + S +I+ + +Y G P+ + ++ +N F ++ + + +M + GL+ +DIV+ V V +P ++ ++ LAD E+R+ G ND++QL+++I+ S I Sbjct: 52 TAIALAIELFGESWKENFIEMNASNENGIDVIRNKIKDIARIRPSN---PLGFKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPESVNKLISRAINGLFDEARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSNDRIQLDALIARIADIGSKI 317
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_METLZ (Replication factor C small subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 5.526e-42 Identity = 90/265 (33.96%), Postives = 158/265 (59.62%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQA 800 +A+AR+++G ++ ELN+SD+RGIDVVR QI+ FA T A+ K++ LDEADA+T+DAQ ALRR +E Y + RF L CN +KII +QSRC +RF PL ++E + + + EG+ + EG A+ + GDMRKA+N LQ + S +T E +Y T N P++I + L F + + + + KG+A +++ ++ + + + + ++V L++ L + ++R+S G + +Q++++++ ++ Sbjct: 57 VALAREMFGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLG---DATFKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSNAKPQEITDLLARCLEGDFETAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEADFRMSEGADADIQMDALLARIVRS 318
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_SULSO (Replication factor C small subunit OS=Sulfolobus solfataricus GN=rfcS PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.742e-41 Identity = 98/261 (37.55%), Postives = 158/261 (60.54%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFV--FKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 LA+ LYG Y LELN+SD+RGIDV+R ++++FA T K+VLLDEAD MT DAQ ALRR +E YT+NTRF L CN ++KII +QSR FRF PL+ V RL ++ + E + + L + + GDMRK++NILQ+ A +I+ EAV+ G PK++ ++ L F + ++ + + GL+ DIV+++ + +I++ ++RV L++ + + E+R+ G +D++QL ++++ Sbjct: 59 LALVHDLYGDNYTEYFLELNASDERGIDVIRNKVKEFARTV---IPGDIPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMINLALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGADDEIQLSALLA 315
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_THEAC (Replication factor C small subunit OS=Thermoplasma acidophilum GN=rfcS PE=3 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 6.109e-41 Identity = 90/268 (33.58%), Postives = 162/268 (60.45%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARS 806 T +A+A +L+G + ++E+N+S++ GIDV+R +I+D A + + K++ LDEAD +T +AQ ALRR +E Y++ TRF CN +KIIP +QSR RF P+ +++ +L+ + + EG + E + ALV + GDMRKA+N+LQ+ + S +I+ + +Y G P+ I+++ +N F ++ + + M + GL+ +DIVR + +V + ++ ++ LAD E+R+ G ND++QL+++I+ + S Sbjct: 52 TAIALAIELFGDSWKENMVEMNASNENGIDVIRNKIKDIARIKPSN---PLGFKILFLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPEKIQKMISRAINGLFDEAREIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSNDRIQLDALIAKLAEIGS 315
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_METKA (Replication factor C small subunit OS=Methanopyrus kandleri GN=rfcS PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 7.979e-41 Identity = 86/242 (35.54%), Postives = 152/242 (62.81%), Query Frame = 3 Query: 63 LNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 L++SD+RGIDV+R ++++FA T+ A K++ LDEAD +T+D+Q ALRR++E Y+ RF L N + II +QSRC F+F L + ERL+ + E+EG+++TE L A+V + GDMR+A+N+LQ+ ++I E+ V+ P+++ ++ + N F + + + E+ R G++ D+VR+V +F + ++P + L+N + D EYRL G ++++QLE++++ Sbjct: 385 LHNSDERGIDVIRTKVKNFARTRPMG---GARFKIIFLDEADNLTRDSQQALRRIMEMYSDACRFILAANYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEITEDALDAIVYVSEGDMRRAINVLQAAAALGREIDEDTVFQIAATARPEEVREMIHHAWNGDFERARELLHELLTRYGMSGEDVVRQVHREIFDMDEIPEEAIPELVNAVGDFEYRLIRGSDERIQLEALLA 623
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_METBF (Replication factor C small subunit OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.322e-40 Identity = 95/272 (34.93%), Postives = 159/272 (58.46%), Query Frame = 3 Query: 9 LAVARKLYGAQ-YHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA--SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV--------TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTF 791 +++AR+++G + ELN+SD+RGIDVVR +I++FA T A K++ LDEADA+T DAQ ALRR +E+++ N RF L CN ++II +QSRC FRF L + +RL+++ + + L +TE G ALV + GDMRKA+N LQ+ ++ I+ +Y T P+DI + L +F + K ++ + +GL+ DIV ++ + + + V L++ + +I++RL+ G +K+QLE++++ F Sbjct: 60 VSIAREIFGEDLWRENFTELNASDERGIDVVRTKIKNFAKTAPMG---GAEFKIIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLIETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIGEIDFRLTEGATEKIQLEALLAHF 328
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_PICTO (Replication factor C small subunit OS=Picrophilus torridus GN=rfcS PE=3 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 3.032e-40 Identity = 87/270 (32.22%), Postives = 160/270 (59.26%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAI 812 T +A+ +L+G + LELN+SD+RGID++R I+DFA + + K K++ LDEAD +T +AQ ALRR +E + TRF CN +KIIP +QSRC RF PL+ + +L+ + + E D+ + L A+ + +GDMRKA+N++Q+ ++ +I +Y +G + + + LN +F+D+ + +M + GL+ +DI+R + + ++ + ++ ++ LA+ E+R+S G +D +Q++++++ + S I Sbjct: 52 TAIALTIELFGDDWKENFLELNASDERGIDIIRNNIKDFAKIRPSN---KLGFKIIFLDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDDDSLDAIYEISDGDMRKAINVMQAI-QSTGEIKPSKIYEISGEINKNEYKNLISLSLNGAFSDAKSLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDNVQMDALLARISYIGSEI 317
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRIL (Replication factor C small subunit 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 5.172e-40 Identity = 92/254 (36.22%), Postives = 145/254 (57.09%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 770 L +AR+LYG + LELN+SD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALRR++E Y +NTRF L+ N ++ II +QSR RF PL V RL+++ E EG+ +++ L + GDMRKA+N LQ ++ITE+ V G P+ + + L +F+ + +I + G+ ++I+R++ V ++ +P V+ L +A+ Y G Q+ Sbjct: 55 LVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISDDALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSPRLLRETLQEALKGNFSKAMTQIYGFVVDGGVGELEIIRQIHREVLRLDVPEYVKPELAYIIAEAHYATLRGARGLTQI 305
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRAE (Replication factor C small subunit 2 OS=Pyrobaculum aerophilum GN=rfcS2 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 8.822e-40 Identity = 92/254 (36.22%), Postives = 147/254 (57.87%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 770 L +AR+LYG + LELN+SD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALRR++E Y +NTRF L+ N V+ II +QSR RF+PL V RL+++ E EG+ V++ L A+ GDMR+A+N LQ S+ +TEE V G P+ + + Y + SF + +I G+ ++I++++ + ++ + V+ + +A+ Y + G + Q+ Sbjct: 55 LVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSDDALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPRLLRETLYEAVKGSFGKAATQIYGFVADGGVGELEIIKQIHREMLRLDVQEYVKPEIAYIIAEAHYAILRGAHGLTQI 305
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_CHICK (Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.352e-39 Identity = 94/273 (34.43%), Postives = 154/273 (56.41%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAA 821 +IL +AR L G + +LELN+S+DRGIDVVR +I+ FA + K K+++LDEAD+MT AQ ALRR +E Y+K TRFAL CN +KII +QSRC R+ L + RL ++E E + T+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ +N + +++K ++ + R G + D++ + +MP +++ + ++ +++ G N LQ+ +++ Q +A A+ Sbjct: 90 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL--PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHL-WRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAAPAAS 359 The following BLAST results are available for this feature:
BLAST of FC873083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873083 ID=FC873083; Name=FC873083; organism=Citrus clementina; type=EST; length=832bpback to top |