FC873083
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRAR (Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 7.468e-39 Identity = 89/254 (35.04%), Postives = 146/254 (57.48%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 770 L +AR+LYG + LELN+SD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALRR++E Y +NTRF L+ N ++ II +QSR RF+PL V RL+++ + EG+ +++ L A+ GDMR+A+N LQ ++ITEE V G P+ + + +F + +I + G+ ++IV+++ K+ +P ++ + +A+ Y + G + Q+ Sbjct: 55 LVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKISDDALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPRLLRETLNDAFRGNFGKAATQIYGFVVDGGIGELEIVKQLHREALKLDVPEYLKPEIAYIIAEAHYAILRGAHGLTQI 305
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.706e-38 Identity = 98/269 (36.43%), Postives = 156/269 (57.99%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNM-ILELNSSDDRGIDVVRQQIQDFAS-----TQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQST-HMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 TILA+A +YG + +LELN+SD+RGI+VVR +I++FA T + + A+ KL++LDEAD+MT DAQ ALRR IE +K TRF L+CN +++II L SRC +FRF PL+ V ERLK + + EG+ E A+ + NGDMRKA+ LQS + +I+E+ +Y G+ P+ I+Q+ SF D + + + + +G + ++ ++ +V K + + + + +++ L G + LQL + S Sbjct: 59 TILAIAMDIYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLVDCCKKNSF-DRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRNLIDGSEEFLQLFDLSS 326
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_HUMAN (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3) HSP 1 Score: 158.303 bits (399), Expect = 4.841e-38 Identity = 96/273 (35.16%), Postives = 152/273 (55.68%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAA 821 +IL +AR L G + +LELN+S+DRGIDVVR +I+ FA + K K+++LDEAD+MT AQ ALRR +E Y+K TRFAL CN +KII +QSRC R+ L + RL +VIE E + T+ GL A++ GDMR+ALN LQST I E V+ P P ++++ +N + +++K ++ + G + DI+ + +M +++ + ++ +++ G N LQ+ +++ Q A VA+ Sbjct: 85 SILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTL--PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS 354
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.257e-38 Identity = 95/273 (34.80%), Postives = 152/273 (55.68%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAA 821 +IL +AR L G + +LELN+S+DRGIDVVR +I+ FA + K K+++LDEAD+MT AQ ALRR +E Y+K TRFAL CN +KII +QSRC R+ L + + RL VIE E + T+ GL A++ GDMR+ALN LQST+ I E V+ P P ++++ ++ +++K ++ + G + DI+ + +M +++ + ++ +++ G N LQ+ +++ Q A VA+ Sbjct: 83 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL--PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSADIDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS 352
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_YEAST (Replication factor C subunit 4 OS=Saccharomyces cerevisiae GN=RFC4 PE=1 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.078e-37 Identity = 100/264 (37.88%), Postives = 151/264 (57.20%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVR---EVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 ++ +A +L G Y + +LELN+SDDRGIDVVR QI+ FA + K K+V+LDEAD+MT AQ ALRR +E Y+ +TRFA CNQ NKII LQSRC R++ L V +RL +I+ E + T GL A++ GDMR+A+N LQST + + V+ +P P ++++ LL + DS + + +KG + +DIV VT + ++K VR+ ++ ++ R+ G LQL S+++ Sbjct: 58 SVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH--KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVK--ESVRLEMIKEIGLTHMRILEGVGTYLQLASMLA 314
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.078e-37 Identity = 95/273 (34.80%), Postives = 151/273 (55.31%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAA 821 +IL +AR L G + +LELN+S+DRGIDVVR +I+ FA + K K+++LDEAD+MT AQ ALRR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +VIE E + T+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ + +++K ++ + G + D++ + M +++ + ++ +++ G N LQ+ +++ Q A VA+ Sbjct: 80 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL--PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHL-WHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLCQKTMAPVAS 349
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_MOUSE (Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.408e-37 Identity = 95/273 (34.80%), Postives = 151/273 (55.31%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAA 821 +IL +AR L G + +LELN+S+DRGIDVVR +I+ FA + K K+++LDEAD+MT AQ ALRR +E Y+K TRFAL CN +KII +QSRC R+ L V RL +VIE E + T+ GL A++ GDMR+ALN LQST I E V+ P P ++++ ++ + +++K ++ + G + D++ + M +++ + ++ +++ G N LQ+ +++ Q A VA+ Sbjct: 80 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL--PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHL-WHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLCQKTMAPVAS 349
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_DROME (Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4 PE=1 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 3.138e-37 Identity = 95/261 (36.40%), Postives = 145/261 (55.56%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 TI +AR L G Y +LELN+S++RGIDVVR +I+ FA + + K+V+LDEAD+MT+ AQ ALRR +E Y+ TRFAL CN KII +QSRC RF L V +L V + E L+ TE GL A+V GDMR+ LN LQST IT E V+ P PK +E++ + ++K ++++ + G + DI+ + +I + +++ + ++ ++ G N LQL ++++ Sbjct: 65 TIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTL--PRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKL-WKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLTALLA 322
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 6.990e-37 Identity = 100/275 (36.36%), Postives = 162/275 (58.91%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNM-ILELNSSDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARS 806 TILA AR+L+G + + +LELN+SD+RGI VVR+++++FA + S S G K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL +RL + + E + +++ G+A LV++ GD+RKA+ LQS ++ITE+ + G + I+ + + SF D + + + + +G A +V ++ V + + + + LA+++ L+ G ++ LQL S+ +T Q S Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSF-DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS 360
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_DICDI (Probable replication factor C subunit 2 OS=Dictyostelium discoideum GN=rfc2 PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.034e-36 Identity = 93/262 (35.50%), Postives = 143/262 (54.58%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV-TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 +IL +AR L GA Y + ELN+SDDR +DVVR +I+ FA + + K+++LDE D+MT AQ ALRR++E Y+ TRFA CNQ KII +QSRC RF L + RL+ V++ E + T+ GLAA++ GDMR+ALN LQ+TH I E V P P I+QI F +++ + ++ G + +DI+ + ++ +P ++ + ++ R + G N +QL ++S Sbjct: 69 SILCLARALLGANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRH--KIIILDEVDSMTSGAQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTDDGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKSDFKEAYPFLKKL-WDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCNLRATTGVNTLVQLTGLLS 327 The following BLAST results are available for this feature:
BLAST of FC873083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873083 ID=FC873083; Name=FC873083; organism=Citrus clementina; type=EST; length=832bpback to top |