FC873083

Overview
NameFC873083
Unique NameFC873083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS3_MIMIV (Putative replication factor C small subunit L499 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.656e-36
Identity = 90/253 (35.57%), Postives = 149/253 (58.89%), Query Frame = 3
Query:    3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSF---GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQI--SYWLLNESFADSFKR----ISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIE 731
            TI   AR++YG   + MILELN+S++RGI+ VR +I++F S++S  F   GV+   KLV+LDE D+MT +AQ  LR+ IEK +  TRF LICN ++KI  ALQSRC  FRF+PL  + +  RL  +   EG+   +  + +++++  GDMR A+N LQ  ++     I  E VY  +G+ +P+ +  +    + LN++   S K+    I  +     + + +++ E+   V + K  +  ++ L+++ A  E
Sbjct:   66 TIKCCAREIYGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKISGHCMPEIVTDVFDILFSLNKNKTKSLKKSVNDIITIVTENNITIFNLLEELKNIVMESKFTTSQKIFLIDNFAKTE 318          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.722e-35
Identity = 98/272 (36.03%), Postives = 155/272 (56.99%), Query Frame = 3
Query:    3 TILAVARKLYGAQYHNM-ILELNSSDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND-LADIEYRLSFGCNDKLQLESIISTFTQ 797
            TILA AR+L+G +   + +LELN+SD+RGI VVR+++++FA    + S S G      K+V+LDEAD+MT  AQ ALRR +EK +K TRF LICN V++II  L SRC++FRF PL      ERL  + E E + +    +A LV++  GD+RKA+  LQS T +   +   E V       +P       +   +    D  + + +  + +G A   +V ++   + + +  SD    ++ + LA+++  L+ G ++ LQL S+ +T  Q
Sbjct:   87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_SCHPO (Replication factor C subunit 4 OS=Schizosaccharomyces pombe GN=rfc4 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.009e-35
Identity = 94/268 (35.07%), Postives = 146/268 (54.48%), Query Frame = 3
Query:    3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQAR 803
            +IL +A  L G  Y   +LELN+SD+RGIDVVR +I+ FA  +          K+++LDEAD+MT  AQ ALRR +E Y+  TRFAL CNQ NKII  +QSRC   R++ L    V +RL ++ +AE ++ T+ GLAAL+    GDMR+A+N LQST      +  E V+     P P  I  +     + +   + +++  +    G + VDIV  +   V  +  +P   R+ ++ ++      +  G    LQL  ++    +++
Sbjct:   70 SILCLAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVIL--PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLTACQSGNIDVALEKLQGI-WDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGVQTLLQLSGLVCRLAKSQ 334          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_SCHPO (Replication factor C subunit 2 OS=Schizosaccharomyces pombe GN=rfc2 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.233e-34
Identity = 93/274 (33.94%), Postives = 161/274 (58.76%), Query Frame = 3
Query:    3 TILAVARKLYGAQY-HNMILELNSSDDRGIDVVRQQIQDFAST---QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ--QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMK---MRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFT 794
            TILA++R+L+G Q   + +LELN+SD+RGI ++R++++ FA T              K+++LDEAD+MT+DAQ ALRR +E Y + TRF LICN + +II  L SRC+++RF PL+  ++ +RL+ +   + + +  G + ALV    GDMRKA+  LQS     Q   IT  +V    G  +P +I +    LL+ ++  +   I  +      +G +   I+ ++   + K + + S V+ ++   L++++ RL+ G ++ LQL  ++S+ +
Sbjct:   68 TILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAG-AVPYNIIRS---LLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRLNDGADETLQLLDLLSSIS 337          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_ENCCU (Replication factor C subunit 4 OS=Encephalitozoon cuniculi GN=RFC4 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.970e-31
Identity = 91/252 (36.11%), Postives = 138/252 (54.76%), Query Frame = 3
Query:   15 VARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVK-ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 767
            +AR+L G +    +LELN+SD+RGID VR  I+ FA  +     VK    K+++LDEAD+MT  AQ A+RRV+E ++   RF LICN   KI   +QSRC   RF  +E   + +RLK + E EG+ +T   L  +V L +GDMR++LNILQ+   +   + ++ +    G P PK IE++   LL     ++ +   E+   K     D +  +  F    K      +  +  LA++  R+S G N +LQ
Sbjct:   55 LARRLLGNK--EGLLELNASDERGIDTVRTTIKSFAQRR-----VKDCEFKIIILDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEALDLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVEEALEMFDEIWEEK----FDPLDLINSFFRAAKNMESYELLKVIGLANL--RISEGVNSRLQ 293          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_YEAST (Replication factor C subunit 2 OS=Saccharomyces cerevisiae GN=RFC2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.360e-31
Identity = 90/280 (32.14%), Postives = 149/280 (53.21%), Query Frame = 3
Query:    3 TILAVARKLYGAQY-HNMILELNSSDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ------QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV-TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQ 797
            TILA+ ++LYG     + ILELN+SD+RGI +VR+++++FA       S            K+++LDEAD+MT DAQ ALRR +E Y+  TRF LICN V +II  L SRC++FRF  L+  +  +RL+ + E E +   +G L  ++ +  GD+R+ + +LQS    +Q       IT   V    G  +P DI       +     D  K+     M+ G +   +V ++   ++      ++ + ++   L   + RL+ G N+ +QL +++   +Q
Sbjct:   74 TILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG-VVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 352          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.081e-29
Identity = 74/180 (41.11%), Postives = 111/180 (61.67%), Query Frame = 3
Query:    3 TILAVARKLYGAQY-HNMILELNSSDDRGIDVVRQQIQDFASTQ-----------SFSFGVKASV------------KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 470
            TILA+A++LYG +   + +LELN+SD+RGI +VRQ+++DFA  Q               G +A +            K+++LDEAD+MT+DAQ ALRR +E Y++ TRF L+CN V +II  L SRC++FRF  L+  +   R+  + + E + +  G    LVR+ +GD+RKA+  LQS
Sbjct:   82 TILALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQS 261          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_CAEEL (Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.145e-29
Identity = 70/158 (44.30%), Postives = 105/158 (66.46%), Query Frame = 3
Query:    9 LAVARKLYGAQ-YHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASV---KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 470
            LA  R+L+    +H+ +L+LN+SD+RGI VVRQ+IQ F S  S     +  V   K+++LDE DAMT++AQ A+RRVIE ++K TRF LICN V+++IP + SRC +FRF  L      +RL+ + +AEG  +++  L  ++    GD+R+A+  LQS
Sbjct:   66 LAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSF-SKSSLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQS 222          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_PYRAB (Replication factor C small subunit OS=Pyrococcus abyssi GN=rfcS PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.195e-28
Identity = 61/176 (34.66%), Postives = 111/176 (63.07%), Query Frame = 3
Query:  267 CNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFT 794
            CN  +KII  +QSRC  FRF PL    + +RL+++ E EGL++TE GL A++ +  GDMR+A+NILQ+     ++IT+E V+L      P+DI ++    L  +F  + +++ E+ +++GL+  D++ ++   VF + +   ++V L + + +  +RL  G N+ +QLE++++ FT
Sbjct: 1256 CNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDRKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEPMKVYLADKIGEYNFRLVEGANEMIQLEALLAQFT 1431          

HSP 2 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 43/87 (49.43%), Postives = 65/87 (74.71%), Query Frame = 3
Query:    9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 269
            LA+AR+L+G  + +  LELN+SD+RGI+V+R+++++FA T+       AS K++ LDEADA+T+DAQ ALRR +E ++ N RF L C
Sbjct:  565 LALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSC 648          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS1_MIMIV (Putative replication factor C small subunit R395 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R395 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.021e-27
Identity = 83/263 (31.56%), Postives = 132/263 (50.19%), Query Frame = 3
Query:    3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK---MPSDVRVRLMNDLADIEYRLSFGCNDKLQLESII 782
            T+  +A++L G       LE+N+++DRG+  +   I  F       F    S K++LLDEAD MT   Q+ +  +I+K+ + T+F   CN  +KII  +QS C   RF  L    + + L  +   E +   E GL  +  + NGDMRK++N LQ T    ++IT+  V      P P+DI +I    L ES  +    I    ++      DI   VT F++ +K   M  ++R+RL+  + + +  +S G   KLQL  +I
Sbjct:   54 TVRCIAKELLGEDMSQGYLEINAAEDRGVRSISTIIPPFCKKV---FAANKS-KIILLDEADIMTSKCQYDINNMIKKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDEQGLRTICYISNGDMRKSINDLQKTAFTFEKITKNLVLKICKVPDPEDIRKIISLCL-ESNLEKADEIMNNIIKLDYCYFDI---VTSFIYVLKVYDMSENLRLRLIMIVNETKINISKGLRSKLQLTGMI 308          
The following BLAST results are available for this feature:
BLAST of FC873083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RFCS3_MIMIV2.656e-3635.57Putative replication factor C small subunit L499 O... [more]
RFC4_MOUSE1.722e-3536.03Replication factor C subunit 4 OS=Mus musculus GN=... [more]
RFC4_SCHPO5.009e-3535.07Replication factor C subunit 4 OS=Schizosaccharomy... [more]
RFC2_SCHPO7.233e-3433.94Replication factor C subunit 2 OS=Schizosaccharomy... [more]
RFC4_ENCCU1.970e-3136.11Replication factor C subunit 4 OS=Encephalitozoon ... [more]
RFC2_YEAST3.360e-3132.14Replication factor C subunit 2 OS=Saccharomyces ce... [more]
RFC2_PHANO1.081e-2941.11Replication factor C subunit 2 OS=Phaeosphaeria no... [more]
RFC4_CAEEL3.145e-2944.30Replication factor C subunit 4 OS=Caenorhabditis e... [more]
RFCS_PYRAB1.195e-2834.66Replication factor C small subunit OS=Pyrococcus a... [more]
RFCS1_MIMIV5.021e-2731.56Putative replication factor C small subunit R395 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873083 ID=FC873083; Name=FC873083; organism=Citrus clementina; type=EST; length=832bp
CTACCATTCTTGCTGTTGCACGGAAGCTTTATGGAGCACAATATCACAAT
ATGATTCTGGAGCTGAATTCGTCTGATGATAGAGGAATTGACGTTGTGCG
GCAACAGATCCAAGATTTTGCTAGCACTCAAAGCTTCTCATTTGGTGTAA
AGGCATCAGTCAAGCTGGTCTTGCTTGATGAGGCTGATGCCATGACAAAG
GATGCTCAGTTTGCCTTGCGTAGAGTGATTGAGAAATACACGAAGAACAC
TAGGTTTGCGCTTATCTGTAATCAGGTCAACAAGATTATTCCAGCACTGC
AGTCTAGATGTACCAGATTCCGATTTGCTCCTCTTGAACCTGTTCATGTG
ACTGAGCGTCTCAAACATGTAATAGAGGCTGAAGGCCTTGATGTAACCGA
GGGTGGCTTGGCAGCGCTTGTACGGCTTTGCAATGGTGATATGAGAAAGG
CCTTGAACATTTTGCAGTCAACACATATGGCGTCTCAGCAAATTACAGAA
GAAGCTGTATACTTGTGCACTGGAAACCCTTTGCCCAAGGACATTGAGCA
AATATCTTACTGGCTTCTGAACGAATCATTTGCGGATAGTTTCAAGCGAA
TATCTGAAATGAAAATGAGGAAAGGATTGGCGTTGGTAGATATTGTGAGG
GAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCATCGGATGTTCGAGT
CCGGCTAATGAATGATTTGGCTGACATAGAGTATAGGTTGAGTTTTGGAT
GCAATGATAAGTTACAGCTTGAATCAATCATTTCTACTTTCACGCAAGCT
CGATCTGCTATTGTTGCTGCTGCAAAATAGAT
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