FC873083
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS3_MIMIV (Putative replication factor C small subunit L499 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.656e-36 Identity = 90/253 (35.57%), Postives = 149/253 (58.89%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSF---GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQI--SYWLLNESFADSFKR----ISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIE 731 TI AR++YG + MILELN+S++RGI+ VR +I++F S++S F GV+ KLV+LDE D+MT +AQ LR+ IEK + TRF LICN ++KI ALQSRC FRF+PL + + RL + EG+ + + +++++ GDMR A+N LQ ++ I E VY +G+ +P+ + + + LN++ S K+ I + + + +++ E+ V + K + ++ L+++ A E Sbjct: 66 TIKCCAREIYGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKISGHCMPEIVTDVFDILFSLNKNKTKSLKKSVNDIITIVTENNITIFNLLEELKNIVMESKFTTSQKIFLIDNFAKTE 318
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.722e-35 Identity = 98/272 (36.03%), Postives = 155/272 (56.99%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNM-ILELNSSDDRGIDVVRQQIQDFAS---TQSFSFGVKAS-VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS-THMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMND-LADIEYRLSFGCNDKLQLESIISTFTQ 797 TILA AR+L+G + + +LELN+SD+RGI VVR+++++FA + S S G K+V+LDEAD+MT AQ ALRR +EK +K TRF LICN V++II L SRC++FRF PL ERL + E E + + +A LV++ GD+RKA+ LQS T + + E V +P + + D + + + + +G A +V ++ + + + SD ++ + LA+++ L+ G ++ LQL S+ +T Q Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_SCHPO (Replication factor C subunit 4 OS=Schizosaccharomyces pombe GN=rfc4 PE=1 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 5.009e-35 Identity = 94/268 (35.07%), Postives = 146/268 (54.48%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKI-KMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQAR 803 +IL +A L G Y +LELN+SD+RGIDVVR +I+ FA + K+++LDEAD+MT AQ ALRR +E Y+ TRFAL CNQ NKII +QSRC R++ L V +RL ++ +AE ++ T+ GLAAL+ GDMR+A+N LQST + E V+ P P I + + + + +++ + G + VDIV + V + +P R+ ++ ++ + G LQL ++ +++ Sbjct: 70 SILCLAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVIL--PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLTACQSGNIDVALEKLQGI-WDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGVQTLLQLSGLVCRLAKSQ 334
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_SCHPO (Replication factor C subunit 2 OS=Schizosaccharomyces pombe GN=rfc2 PE=1 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 7.233e-34 Identity = 93/274 (33.94%), Postives = 161/274 (58.76%), Query Frame = 3 Query: 3 TILAVARKLYGAQY-HNMILELNSSDDRGIDVVRQQIQDFAST---QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ--QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMK---MRKGLALVDIVREVTMFVFKIK-MPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFT 794 TILA++R+L+G Q + +LELN+SD+RGI ++R++++ FA T K+++LDEAD+MT+DAQ ALRR +E Y + TRF LICN + +II L SRC+++RF PL+ ++ +RL+ + + + + G + ALV GDMRKA+ LQS Q IT +V G +P +I + LL+ ++ + I + +G + I+ ++ + K + + S V+ ++ L++++ RL+ G ++ LQL ++S+ + Sbjct: 68 TILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAG-AVPYNIIRS---LLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRLNDGADETLQLLDLLSSIS 337
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_ENCCU (Replication factor C subunit 4 OS=Encephalitozoon cuniculi GN=RFC4 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.970e-31 Identity = 91/252 (36.11%), Postives = 138/252 (54.76%), Query Frame = 3 Query: 15 VARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVK-ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQ 767 +AR+L G + +LELN+SD+RGID VR I+ FA + VK K+++LDEAD+MT AQ A+RRV+E ++ RF LICN KI +QSRC RF +E + +RLK + E EG+ +T L +V L +GDMR++LNILQ+ + + ++ + G P PK IE++ LL ++ + E+ K D + + F K + + LA++ R+S G N +LQ Sbjct: 55 LARRLLGNK--EGLLELNASDERGIDTVRTTIKSFAQRR-----VKDCEFKIIILDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEALDLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVEEALEMFDEIWEEK----FDPLDLINSFFRAAKNMESYELLKVIGLANL--RISEGVNSRLQ 293
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_YEAST (Replication factor C subunit 2 OS=Saccharomyces cerevisiae GN=RFC2 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.360e-31 Identity = 90/280 (32.14%), Postives = 149/280 (53.21%), Query Frame = 3 Query: 3 TILAVARKLYGAQY-HNMILELNSSDDRGIDVVRQQIQDFA-------STQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQ------QITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV-TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQ 797 TILA+ ++LYG + ILELN+SD+RGI +VR+++++FA S K+++LDEAD+MT DAQ ALRR +E Y+ TRF LICN V +II L SRC++FRF L+ + +RL+ + E E + +G L ++ + GD+R+ + +LQS +Q IT V G +P DI + D K+ M+ G + +V ++ ++ ++ + ++ L + RL+ G N+ +QL +++ +Q Sbjct: 74 TILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG-VVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 352
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.081e-29 Identity = 74/180 (41.11%), Postives = 111/180 (61.67%), Query Frame = 3 Query: 3 TILAVARKLYGAQY-HNMILELNSSDDRGIDVVRQQIQDFASTQ-----------SFSFGVKASV------------KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 470 TILA+A++LYG + + +LELN+SD+RGI +VRQ+++DFA Q G +A + K+++LDEAD+MT+DAQ ALRR +E Y++ TRF L+CN V +II L SRC++FRF L+ + R+ + + E + + G LVR+ +GD+RKA+ LQS Sbjct: 82 TILALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQS 261
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC4_CAEEL (Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.145e-29 Identity = 70/158 (44.30%), Postives = 105/158 (66.46%), Query Frame = 3 Query: 9 LAVARKLYGAQ-YHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASV---KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 470 LA R+L+ +H+ +L+LN+SD+RGI VVRQ+IQ F S S + V K+++LDE DAMT++AQ A+RRVIE ++K TRF LICN V+++IP + SRC +FRF L +RL+ + +AEG +++ L ++ GD+R+A+ LQS Sbjct: 66 LAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSF-SKSSLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQS 222
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_PYRAB (Replication factor C small subunit OS=Pyrococcus abyssi GN=rfcS PE=1 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.195e-28 Identity = 61/176 (34.66%), Postives = 111/176 (63.07%), Query Frame = 3 Query: 267 CNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFT 794 CN +KII +QSRC FRF PL + +RL+++ E EGL++TE GL A++ + GDMR+A+NILQ+ ++IT+E V+L P+DI ++ L +F + +++ E+ +++GL+ D++ ++ VF + + ++V L + + + +RL G N+ +QLE++++ FT Sbjct: 1256 CNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDRKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEPMKVYLADKIGEYNFRLVEGANEMIQLEALLAQFT 1431 HSP 2 Score: 88.9669 bits (219), Expect = 3.607e-17 Identity = 43/87 (49.43%), Postives = 65/87 (74.71%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 269 LA+AR+L+G + + LELN+SD+RGI+V+R+++++FA T+ AS K++ LDEADA+T+DAQ ALRR +E ++ N RF L C Sbjct: 565 LALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSC 648
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS1_MIMIV (Putative replication factor C small subunit R395 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R395 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.021e-27 Identity = 83/263 (31.56%), Postives = 132/263 (50.19%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIK---MPSDVRVRLMNDLADIEYRLSFGCNDKLQLESII 782 T+ +A++L G LE+N+++DRG+ + I F F S K++LLDEAD MT Q+ + +I+K+ + T+F CN +KII +QS C RF L + + L + E + E GL + + NGDMRK++N LQ T ++IT+ V P P+DI +I L ES + I ++ DI VT F++ +K M ++R+RL+ + + + +S G KLQL +I Sbjct: 54 TVRCIAKELLGEDMSQGYLEINAAEDRGVRSISTIIPPFCKKV---FAANKS-KIILLDEADIMTSKCQYDINNMIKKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDEQGLRTICYISNGDMRKSINDLQKTAFTFEKITKNLVLKICKVPDPEDIRKIISLCL-ESNLEKADEIMNNIIKLDYCYFDI---VTSFIYVLKVYDMSENLRLRLIMIVNETKINISKGLRSKLQLTGMI 308 The following BLAST results are available for this feature:
BLAST of FC873083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873083 ID=FC873083; Name=FC873083; organism=Citrus clementina; type=EST; length=832bpback to top |