FC873083
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS4_MIMIV (Putative replication factor C small subunit L510 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 7.250e-26 Identity = 61/160 (38.12%), Postives = 100/160 (62.50%), Query Frame = 3 Query: 6 ILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVK-----ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 470 ILA+ R+++ + N ++E N+SDDRGI+ VR++I + A ++ S K+++LDEAD+MT +AQ ALR +IE+Y+ TRF ICN + KI A++SRC+ F L + E+L + E +++ + L ++ + NGDMRKA+ +LQ+ Sbjct: 57 ILAMGREIFKEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDISLKESMELPKNILHTIIDVSNGDMRKAIMLLQN 216
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_METJA (Replication factor C small subunit OS=Methanocaldococcus jannaschii GN=rfcS PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.367e-24 Identity = 53/173 (30.64%), Postives = 106/173 (61.27%), Query Frame = 3 Query: 267 CNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 CN +KIIP +QSRC FRF+PL+ + ++LK + E EGL++TE GL A++ + GDMRKA+N+LQ+ S I +E VY + P++++++ L+ F ++ + ++ + G++ DI+ ++ + + + +V L + + + ++R+ G N+++QL ++++ Sbjct: 1668 CNYPSKIIPPIQSRCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINVLQTAAALSDVIDDEIVYKVSSRARPEEVKKMMELALDGKFMEARDLLYKLMVEWGMSGEDILNQMFREINSLDIDERKKVELADAIGETDFRIVEGANERIQLSALLA 1840 HSP 2 Score: 74.3294 bits (181), Expect = 9.193e-13 Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 3 Query: 48 NMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCN 434 N+ + L++SD+RGIDV+R +++DFA T+ K++ LDE+DA+T DAQ ALRR +EKY+ RF L C + I R + + +LKHV+ G D+ G+ ++ N Sbjct: 1055 NVPILLHNSDERGIDVIRTKVKDFARTKPIG---DVPFKIIFLDESDALTADAQNALRRTMEKYSDVCRFILSCLTGDAKITLPDER--EIKIEDFIKMFEERKLKHVLNRNGEDLVLAGVKFNSKIVN 1178
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC5_SCHPO (Replication factor C subunit 5 OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.464e-18 Identity = 70/256 (27.34%), Postives = 125/256 (48.83%), Query Frame = 3 Query: 57 LELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS---QQITEEAVYLCTGNPLP---KDIEQISYWLLNESFADSFKRISEM---KMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTF 791 LE+ SD D ++++ ++D A + K K+V+++ AD +T+DAQ ALRR +EKY+ N R LI N +KII ++SR R A P + + ++ A+GL+ + L + C+ ++RKA+ +L++ H S +Q+ + L PLP I+Q+ +L E + M + + I++E+ F F K+ + + L+ A+ E+R G LE+ ++ F Sbjct: 92 LEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQLIDTGAQL----PLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSF-FLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYF 342
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.376e-15 Identity = 51/154 (33.12%), Postives = 75/154 (48.70%), Query Frame = 3 Query: 48 NMILELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEE 503 N LE+N SD D V+++ ++ A +Q + K+VLL E D +TKDAQ ALRR +EKY R L CN +K+IP ++SRC R + L V EGL + L ++RKAL + ++ + TE+ Sbjct: 90 NYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTED 243
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 5.758e-15 Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 3 Query: 48 NMILELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL------NILQSTHMASQQI--TEEAVYL 515 N LE+N SD D V+++ ++ A +Q + K+VLL E D +TKDAQ ALRR +EKY R L CN +K+IP ++SRC R + L V + EGL++ L ++RKAL + Q A Q+I T+ VYL Sbjct: 90 NYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYL 255
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15 Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 3 Query: 48 NMILELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL------NILQSTHMASQQI--TEEAVYL 515 N LE+N SD D V+++ ++ A +Q + K+VLL E D +TKDAQ ALRR +EKY R L CN +K+IP ++SRC R + L V + EGL++ L ++RKAL + Q A Q+I T+ VYL Sbjct: 90 NYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYL 255
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC5_NEUCR (Replication factor C subunit 5 OS=Neurospora crassa GN=B14D6.460 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14 Identity = 48/155 (30.97%), Postives = 82/155 (52.90%), Query Frame = 3 Query: 42 YHNMILELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITE 500 YH LE+ SD D VV+ +++ A TQ K K+V+++EAD +T+DAQ ALRR +EKY+ N R L+ N II ++SRC R A + + L + EG + +G + ++R+AL + ++ + ++++T+ Sbjct: 91 YH---LEITPSDVGNYDRVVVQDLLKEVAQTQQVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTD 242
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC5_YEAST (Replication factor C subunit 5 OS=Saccharomyces cerevisiae GN=RFC5 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.160e-13 Identity = 48/151 (31.79%), Postives = 85/151 (56.29%), Query Frame = 3 Query: 42 YHNMILELNSSDDRGID--VVRQQIQDFASTQSFSF-----GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV-TEGGLAALVRLCNGDMRKALNILQS 470 YH LE+ SD D V+++ +++ A + F G+ K V+++EA+++TKDAQ ALRR +EKY+KN R ++C+ ++ II ++SRC R ++ L V+ E + + T+ L + + NG++R +L +L+S Sbjct: 92 YH---LEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13 Identity = 65/261 (24.90%), Postives = 118/261 (45.21%), Query Frame = 3 Query: 36 AQYHNMILELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD-------IVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTF 791 + YH +E+N + D V++ I++ A + G + K+V+L+E D ++KDAQ ALRR +EKY R L C+ K+I ++SRC R + + L V AE D+ + + G++R AL +L+S Q ++ + T PL D E ++ + F + + K L+ I + + + +FK K+ +++ +++ + E+R G LE+ I+ F Sbjct: 89 SHYH---IEINPGEAGSYDRVVIQTIIKEIAQSPPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLES------QKAKQYPFQSTELPL-LDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFK-KLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKF 338
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: DPO3X_BUCAP (DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp. Schizaphis graminum GN=dnaX PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11 Identity = 50/210 (23.81%), Postives = 102/210 (48.57%), Query Frame = 3 Query: 57 LELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ-STHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKM 683 +E++++ ++ +R+ + + T S K+ K+ L+DE +++ + AL + +E+ ++ +F L V KI ++SRC F+ L + LKH+++ G + E L + NG MR ALN+L+ + H++ I + G P K ++ +LL + ++++ + GL +I+ E+ F+ I M Sbjct: 91 IEIDAASRTKVEEIREILDNIYYTPS-----KSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSEEDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEMLGIPNKKHAFLLTKFLLEQDSKKMMCLLNKIS-KIGLEWQNILIEMMRFLHHIAM 294 The following BLAST results are available for this feature:
BLAST of FC873083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873083 ID=FC873083; Name=FC873083; organism=Citrus clementina; type=EST; length=832bpback to top |