FC873083

Overview
NameFC873083
Unique NameFC873083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS4_MIMIV (Putative replication factor C small subunit L510 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.250e-26
Identity = 61/160 (38.12%), Postives = 100/160 (62.50%), Query Frame = 3
Query:    6 ILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVK-----ASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQS 470
            ILA+ R+++   + N ++E N+SDDRGI+ VR++I + A        ++      S K+++LDEAD+MT +AQ ALR +IE+Y+  TRF  ICN + KI  A++SRC+   F  L    + E+L  +   E +++ +  L  ++ + NGDMRKA+ +LQ+
Sbjct:   57 ILAMGREIFKEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDISLKESMELPKNILHTIIDVSNGDMRKAIMLLQN 216          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFCS_METJA (Replication factor C small subunit OS=Methanocaldococcus jannaschii GN=rfcS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.367e-24
Identity = 53/173 (30.64%), Postives = 106/173 (61.27%), Query Frame = 3
Query:  267 CNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785
            CN  +KIIP +QSRC  FRF+PL+   + ++LK + E EGL++TE GL A++ +  GDMRKA+N+LQ+    S  I +E VY  +    P++++++    L+  F ++   + ++ +  G++  DI+ ++   +  + +    +V L + + + ++R+  G N+++QL ++++
Sbjct: 1668 CNYPSKIIPPIQSRCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINVLQTAAALSDVIDDEIVYKVSSRARPEEVKKMMELALDGKFMEARDLLYKLMVEWGMSGEDILNQMFREINSLDIDERKKVELADAIGETDFRIVEGANERIQLSALLA 1840          

HSP 2 Score: 74.3294 bits (181), Expect = 9.193e-13
Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   48 NMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCN 434
            N+ + L++SD+RGIDV+R +++DFA T+          K++ LDE+DA+T DAQ ALRR +EKY+   RF L C   +  I     R    +      +    +LKHV+   G D+   G+    ++ N
Sbjct: 1055 NVPILLHNSDERGIDVIRTKVKDFARTKPIG---DVPFKIIFLDESDALTADAQNALRRTMEKYSDVCRFILSCLTGDAKITLPDER--EIKIEDFIKMFEERKLKHVLNRNGEDLVLAGVKFNSKIVN 1178          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC5_SCHPO (Replication factor C subunit 5 OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.464e-18
Identity = 70/256 (27.34%), Postives = 125/256 (48.83%), Query Frame = 3
Query:   57 LELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS---QQITEEAVYLCTGNPLP---KDIEQISYWLLNESFADSFKRISEM---KMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTF 791
            LE+  SD    D  ++++ ++D A +       K   K+V+++ AD +T+DAQ ALRR +EKY+ N R  LI N  +KII  ++SR    R A   P  +   +  ++ A+GL+  +  L  +   C+ ++RKA+ +L++ H  S   +Q+ +    L    PLP     I+Q+   +L E        +  M    +   +    I++E+  F F  K+ + +   L+   A+ E+R   G      LE+ ++ F
Sbjct:   92 LEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQLIDTGAQL----PLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSF-FLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYF 342          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.376e-15
Identity = 51/154 (33.12%), Postives = 75/154 (48.70%), Query Frame = 3
Query:   48 NMILELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEE 503
            N  LE+N SD    D  V+++ ++  A +Q      +   K+VLL E D +TKDAQ ALRR +EKY    R  L CN  +K+IP ++SRC   R        +   L  V   EGL +       L      ++RKAL + ++  +     TE+
Sbjct:   90 NYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTED 243          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.758e-15
Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 3
Query:   48 NMILELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL------NILQSTHMASQQI--TEEAVYL 515
            N  LE+N SD    D  V+++ ++  A +Q      +   K+VLL E D +TKDAQ ALRR +EKY    R  L CN  +K+IP ++SRC   R        +   L  V + EGL++       L      ++RKAL       + Q    A Q+I  T+  VYL
Sbjct:   90 NYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYL 255          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15
Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 3
Query:   48 NMILELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL------NILQSTHMASQQI--TEEAVYL 515
            N  LE+N SD    D  V+++ ++  A +Q      +   K+VLL E D +TKDAQ ALRR +EKY    R  L CN  +K+IP ++SRC   R        +   L  V + EGL++       L      ++RKAL       + Q    A Q+I  T+  VYL
Sbjct:   90 NYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYL 255          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC5_NEUCR (Replication factor C subunit 5 OS=Neurospora crassa GN=B14D6.460 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14
Identity = 48/155 (30.97%), Postives = 82/155 (52.90%), Query Frame = 3
Query:   42 YHNMILELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITE 500
            YH   LE+  SD    D  VV+  +++ A TQ      K   K+V+++EAD +T+DAQ ALRR +EKY+ N R  L+ N    II  ++SRC   R A      + + L    + EG  + +G    +      ++R+AL + ++ +  ++++T+
Sbjct:   91 YH---LEITPSDVGNYDRVVVQDLLKEVAQTQQVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTD 242          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC5_YEAST (Replication factor C subunit 5 OS=Saccharomyces cerevisiae GN=RFC5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.160e-13
Identity = 48/151 (31.79%), Postives = 85/151 (56.29%), Query Frame = 3
Query:   42 YHNMILELNSSDDRGID--VVRQQIQDFASTQSFSF-----GVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDV-TEGGLAALVRLCNGDMRKALNILQS 470
            YH   LE+  SD    D  V+++ +++ A  +   F     G+    K V+++EA+++TKDAQ ALRR +EKY+KN R  ++C+ ++ II  ++SRC   R        ++  L  V+  E + + T+  L  + +  NG++R +L +L+S
Sbjct:   92 YH---LEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 65/261 (24.90%), Postives = 118/261 (45.21%), Query Frame = 3
Query:   36 AQYHNMILELNSSDDRGID--VVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD-------IVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTF 791
            + YH   +E+N  +    D  V++  I++ A +     G   + K+V+L+E D ++KDAQ ALRR +EKY    R  L C+   K+I  ++SRC   R        + + L  V  AE  D+       + +   G++R AL +L+S      Q  ++  +  T  PL  D E     ++ + F +       +   K   L+        I + + + +FK K+  +++  +++  +  E+R   G      LE+ I+ F
Sbjct:   89 SHYH---IEINPGEAGSYDRVVIQTIIKEIAQSPPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLES------QKAKQYPFQSTELPL-LDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFK-KLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKF 338          
BLAST of FC873083 vs. ExPASy Swiss-Prot
Match: DPO3X_BUCAP (DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp. Schizaphis graminum GN=dnaX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 50/210 (23.81%), Postives = 102/210 (48.57%), Query Frame = 3
Query:   57 LELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQ-STHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKM 683
            +E++++    ++ +R+ + +   T S     K+  K+ L+DE   +++ +  AL + +E+  ++ +F L    V KI   ++SRC  F+   L    +   LKH+++  G +  E  L  +    NG MR ALN+L+ + H++   I  +      G P  K    ++ +LL +        ++++  + GL   +I+ E+  F+  I M
Sbjct:   91 IEIDAASRTKVEEIREILDNIYYTPS-----KSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSEEDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEMLGIPNKKHAFLLTKFLLEQDSKKMMCLLNKIS-KIGLEWQNILIEMMRFLHHIAM 294          
The following BLAST results are available for this feature:
BLAST of FC873083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RFCS4_MIMIV7.250e-2638.13Putative replication factor C small subunit L510 O... [more]
RFCS_METJA1.367e-2430.64Replication factor C small subunit OS=Methanocaldo... [more]
RFC5_SCHPO1.464e-1827.34Replication factor C subunit 5 OS=Schizosaccharomy... [more]
RFC3_MOUSE3.376e-1533.12Replication factor C subunit 3 OS=Mus musculus GN=... [more]
RFC3_HUMAN5.758e-1534.34Replication factor C subunit 3 OS=Homo sapiens GN=... [more]
RFC3_BOVIN7.520e-1534.34Replication factor C subunit 3 OS=Bos taurus GN=RF... [more]
RFC5_NEUCR1.283e-1430.97Replication factor C subunit 5 OS=Neurospora crass... [more]
RFC5_YEAST3.160e-1331.79Replication factor C subunit 5 OS=Saccharomyces ce... [more]
RFC3_DICDI5.389e-1324.90Probable replication factor C subunit 3 OS=Dictyos... [more]
DPO3X_BUCAP6.588e-1123.81DNA polymerase III subunit gamma OS=Buchnera aphid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873083 ID=FC873083; Name=FC873083; organism=Citrus clementina; type=EST; length=832bp
CTACCATTCTTGCTGTTGCACGGAAGCTTTATGGAGCACAATATCACAAT
ATGATTCTGGAGCTGAATTCGTCTGATGATAGAGGAATTGACGTTGTGCG
GCAACAGATCCAAGATTTTGCTAGCACTCAAAGCTTCTCATTTGGTGTAA
AGGCATCAGTCAAGCTGGTCTTGCTTGATGAGGCTGATGCCATGACAAAG
GATGCTCAGTTTGCCTTGCGTAGAGTGATTGAGAAATACACGAAGAACAC
TAGGTTTGCGCTTATCTGTAATCAGGTCAACAAGATTATTCCAGCACTGC
AGTCTAGATGTACCAGATTCCGATTTGCTCCTCTTGAACCTGTTCATGTG
ACTGAGCGTCTCAAACATGTAATAGAGGCTGAAGGCCTTGATGTAACCGA
GGGTGGCTTGGCAGCGCTTGTACGGCTTTGCAATGGTGATATGAGAAAGG
CCTTGAACATTTTGCAGTCAACACATATGGCGTCTCAGCAAATTACAGAA
GAAGCTGTATACTTGTGCACTGGAAACCCTTTGCCCAAGGACATTGAGCA
AATATCTTACTGGCTTCTGAACGAATCATTTGCGGATAGTTTCAAGCGAA
TATCTGAAATGAAAATGAGGAAAGGATTGGCGTTGGTAGATATTGTGAGG
GAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCATCGGATGTTCGAGT
CCGGCTAATGAATGATTTGGCTGACATAGAGTATAGGTTGAGTTTTGGAT
GCAATGATAAGTTACAGCTTGAATCAATCATTTCTACTTTCACGCAAGCT
CGATCTGCTATTGTTGCTGCTGCAAAATAGAT
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