FC873097

Overview
NameFC873097
Unique NameFC873097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_MOUSE (Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA  IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87          
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_MACFA (Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA  IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87          
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_HUMAN (Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA  IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87          
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_BOVIN (Dynein light chain 1, cytoplasmic OS=Bos taurus GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA  IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87          
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_SCHPO (Dynein light chain 1, cytoplasmic OS=Schizosaccharomyces pombe GN=dlc2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 3
Query:    6 AVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            AVI   DM E MQQ              + +  +IA FIK+EFDK +   W CIVG +FGSFVTH   +FIYF +G++A LLF+
Sbjct:    2 AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEK--DIAAFIKREFDKKFSPTWHCIVGRNFGSFVTHESRHFIYFYLGTVAFLLFK 83          
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_CHLRE (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.948e-12
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQ               + +  +IA +IKKEFD+ +   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    7 KAVIKNADMSEEMQADAVDCATQALEKYNIEK--DIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 89          
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_EMENI (Dynein light chain, cytoplasmic OS=Emericella nidulans GN=nudG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.343e-11
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 3
Query:   12 IGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            I   DM E MQQ              + +  +IA++IK+EFD   G  W C+VG +FGSFVTH   +FIYF +G  AILLF+
Sbjct:   13 IKSVDMSEDMQQEAVEVAIEAMEKYHIEK--DIAQYIKREFDSRKGATWHCVVGRNFGSFVTHETKHFIYFYLGHCAILLFK 92          
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL2_SCHMA (Probable dynein light chain OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.365e-11
Identity = 36/85 (42.35%), Postives = 47/85 (55.29%), Query Frame = 3
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQ+              + +  ++A +IKKEFD+ Y   W CIVG  FGS+VTH   +FIYF +   A LLF+
Sbjct:    5 KAVIKNADMHEDMQETAVHTAAAALDKYEIEK--DVAAYIKKEFDRKYNPNWHCIVGKHFGSYVTHETQHFIYFYLQERAFLLFK 87          
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL_DICDI (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 3
Query:  105 EIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            +IA  IKKEFDK Y   W CIVG  FGSFVTH   NFIYF +   ++LLF+
Sbjct:   39 DIAMIIKKEFDKKYSPTWHCIVGKSFGSFVTHETKNFIYFNINKHSVLLFK 89          
The following BLAST results are available for this feature:
BLAST of FC873097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
DYL1_MOUSE2.734e-1348.24Dynein light chain 1, cytoplasmic OS=Mus musculus ... [more]
DYL1_MACFA2.734e-1348.24Dynein light chain 1, cytoplasmic OS=Macaca fascic... [more]
DYL1_HUMAN2.734e-1348.24Dynein light chain 1, cytoplasmic OS=Homo sapiens ... [more]
DYL1_BOVIN2.734e-1348.24Dynein light chain 1, cytoplasmic OS=Bos taurus GN... [more]
DYL1_SCHPO1.357e-1246.43Dynein light chain 1, cytoplasmic OS=Schizosacchar... [more]
DYL1_CHLRE3.948e-1244.71Dynein 8 kDa light chain, flagellar outer arm OS=C... [more]
DYL1_EMENI3.343e-1143.90Dynein light chain, cytoplasmic OS=Emericella nidu... [more]
DYL2_SCHMA4.365e-1142.35Probable dynein light chain OS=Schistosoma mansoni... [more]
DYL_DICDI7.446e-1158.82Dynein light chain, cytoplasmic OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873097 ID=FC873097; Name=FC873097; organism=Citrus clementina; type=EST; length=514bp
GCAAAGCAGTGATTGGTGAGACTGACATGCTTGAAACCATGCAGCAAGAT
GCACTTGATTTGGCAGCAAAAGCGCTCGATTTCTTTGATGTCACCGAACC
CACCGAAATTGCACGCTTCATTAAAAAGGAATTTGATAAGGCGTATGGGA
CTGGATGGCAATGCATTGTGGGGACTGATTTTGGTTCCTTTGTCACACAT
TGTTATGGGAACTTCATCTACTTTCGTGTTGGTAGCCTTGCGATTTTGCT
CTTCAGGGGCTCTGCTGCTCCAGGGAGCGACGATGATGAAGCAAATCAGT
TTGCCAAATTAGCTGTAGAGACAGTACAAGCTTAATTAATGTTTTTGAAA
CTTCAGTATTGCAGCTTCCTTGGTCTCTCTTGTATCCTGTCTTAATTAGT
AGTGTAGACTAGAAAGACCAAGAAGTAAAAGAGCGAAAAAAATATATACG
TGTTTTTAGTTTAAATTATATATTCACCCGTTCAGTTTTGTACAGTAAAA
AAAAAAAAAAAAAA
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