FC873098

Overview
NameFC873098
Unique NameFC873098
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10127 contig Ccv1_Contig10127:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_MOUSE (40S ribosomal protein S12 OS=Mus musculus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2
Query:  119 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 481
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+AL A+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 69/118 (58.47%), Postives = 92/118 (77.97%), Query Frame = 2
Query:  128 MDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 481
            MD+MTAL+ VL+K++   GL RGLHE AK +++ +AQLCVLA + N+P Y +LV+ALCA+H ++L+ VP  K LGEW GLCKID EGKARKVVGCSC V+  FGEES+   V+ +++K
Sbjct:   17 MDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLK 134          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_DROME (40S ribosomal protein S12 OS=Drosophila melanogaster GN=RpS12 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.419e-34
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2
Query:  116 LGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKSH 487
            L  AMD+ TALQ VL+KSL   GL  G+H+  K ++K  A LC+LAE  ++P+Y KLV ALC +H + L+ V S K LGEW+GLCKID EGK RKV GCS VV+KDFGEE+  L+VV+ H++ +
Sbjct:   15 LDGAMDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQN 138          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_DICDI (40S ribosomal protein S12 OS=Dictyostelium discoideum GN=rps12 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 2
Query:  131 DLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHI 478
            D M ALQ V+++SLA  G+ARGLHE  K ++K  A+LCVLA +C++P++V+LVKAL  +HN+ L+ VP  K LGEWAGLCK+D +  ARKVV CS +V+K FG+ESD    + ++I
Sbjct:   18 DPMVALQKVIKESLAVQGVARGLHETVKALDKRTARLCVLASNCDEPNFVRLVKALATEHNIPLIEVPDNKALGEWAGLCKLDKDLAARKVVACSTLVIKTFGKESDDYKFLMEYI 133          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12A_SCHPO (40S ribosomal protein S12-A OS=Schizosaccharomyces pombe GN=rps12a PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 2
Query:  122 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGL 457
            E + +  AL+ VL+++L H GLARG+ E +K +++  A LCVL E C+Q  YVKLV+ALCA+    L+ V   K LGEWAGLC +D +G ARKVVGCSCV V D+GE+S  L
Sbjct:   25 ETVSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAAL 136          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_ERYGR (40S ribosomal protein S12 OS=Erysiphe graminis subsp. hordei GN=RPS12 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 2
Query:  128 MDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEES 448
            M ++ AL+  LR +L H GLARGL E +K +++  A +CVL E C +  Y KL+ ALC++H + L+ VP  K LGEWAGLC +D EG ARKVV CSCVVVK++GEES
Sbjct:   12 MTVLDALKGALRTALMHDGLARGLREASKALDRREAHMCVLNEACEEEAYKKLIVALCSEHKIPLIKVPDGKQLGEWAGLCVLDREGNARKVVNCSCVVVKNWGEES 118          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12B_SCHPO (40S ribosomal protein S12-B OS=Schizosaccharomyces pombe GN=rps12b PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 2
Query:  143 ALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVV 466
            +L+ VL+++L H GLARG+ E +K +++  A LCVL E C+Q  YVKLV+ALCA+    L+ V   K LGEWAGLC +D +G ARKVVGCSCV V D+GE+S  L  +
Sbjct:   35 SLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_CAEEL (40S ribosomal protein S12 OS=Caenorhabditis elegans GN=rps-12 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 60/119 (50.42%), Postives = 79/119 (66.39%), Query Frame = 2
Query:  128 MDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 484
            MD   AL+ VLR +    GLA+GLHE  K ++K  A  CVLAE+C++P YVKLV+ LCA+H + L+ V   K +GE+ GLCK D EGKARKVVGCS  VV ++G E  G  ++  +  S
Sbjct:   20 MDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDYFAS 138          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_YEAST (40S ribosomal protein S12 OS=Saccharomyces cerevisiae GN=RPS12 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 2
Query:  143 ALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCAD--HNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQH 475
            AL+VVLR +L H GLARGL E  K + +  A L VL     + + +KLV+ L  D  + V L+ V  AK LGEWAGL KID EG ARKVVG S VVVK++G E+D L+++ +H
Sbjct:   27 ALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLGKIDREGNARKVVGASVVVVKNWGAETDELSMIMEH 139          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_PLAF7 (40S ribosomal protein S12 OS=Plasmodium falciparum (isolate 3D7) GN=RPS12 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  131 DLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPS-AKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEES 448
            D +TA+Q V++ +  H GL  G+ E  K IE   A++C L++ C++P Y KL+  LCA+ N+ L  V + +K LG WAGL K+D+EG ARK++G S V V DFGE+S
Sbjct:   20 DNVTAIQKVIKNAHVHDGLKIGIREVIKSIESQEAKVCFLSDVCSEPAYKKLITTLCAEKNIPLFMVQNDSKDLGHWAGLFKLDNEGNARKIIGASSVAVVDFGEDS 126          
The following BLAST results are available for this feature:
BLAST of FC873098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_MOUSE1.980e-3658.6840S ribosomal protein S12 OS=Mus musculus GN=Rps12... [more]
RS12_CYAPA3.377e-3658.4740S ribosomal protein S12 OS=Cyanophora paradoxa G... [more]
RS12_DROME1.419e-3455.6540S ribosomal protein S12 OS=Drosophila melanogast... [more]
RS12_DICDI1.124e-3154.3140S ribosomal protein S12 OS=Dictyostelium discoid... [more]
RS12A_SCHPO1.374e-2953.5740S ribosomal protein S12-A OS=Schizosaccharomyces... [more]
RS12_ERYGR3.998e-2955.1440S ribosomal protein S12 OS=Erysiphe graminis sub... [more]
RS12B_SCHPO1.519e-2853.7040S ribosomal protein S12-B OS=Schizosaccharomyces... [more]
RS12_CAEEL2.592e-2850.4240S ribosomal protein S12 OS=Caenorhabditis elegan... [more]
RS12_YEAST7.304e-2351.3340S ribosomal protein S12 OS=Saccharomyces cerevis... [more]
RS12_PLAF71.377e-2146.7340S ribosomal protein S12 OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873098 ID=FC873098; Name=FC873098; organism=Citrus clementina; type=EST; length=698bp
CCAGTCGCAGGCCAACGTGCGCTCTCCGCTAAGAGTAAATATTTGAACAA
ACAACAAGAAGACAATGTCAGGTGATGAGGCTGCCCCTGCTGTTGAGACA
GCACCTCCTGCCCCCCTTGGTGAGGCAATGGATCTGATGACGGCTTTGCA
GGTTGTGTTGAGAAAATCACTTGCTCATGGTGGTCTTGCTCGTGGCCTTC
ATGAAGGTGCCAAAGTGATTGAAAAGCATGCTGCCCAGCTCTGTGTATTG
GCTGAGGATTGTAACCAACCTGACTATGTGAAATTGGTCAAGGCACTCTG
TGCTGACCATAACGTAAGCTTGTTGACGGTTCCCAGTGCCAAGACCCTCG
GCGAGTGGGCTGGTTTGTGCAAGATTGACTCAGAGGGAAAGGCCAGGAAG
GTTGTGGGTTGTTCCTGTGTTGTTGTGAAGGATTTCGGAGAGGAAAGCGA
TGGTCTTAACGTTGTTCAGCAGCACATCAAGTCTCACTGAGTAGCAGTGA
TGGATTCGTAGTTCAACTTTTATATTTATAGAGAGGGCCTTGTCTTTTTT
CTGTCAAATTGTGTTTGGTTGTCTCACTCCAAGGAGATTTTGTGTTCGTT
AGTTGCTATTACTTTTAGTACTTTTGTTCCTCCTTAATCCTTTATTGCAA
CTGAAAACATCAATCCTTTTCTATAAAAAAAAAAAAAAAAAAAAAAAA
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