FC873100

Overview
NameFC873100
Unique NameFC873100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14949 contig Ccv1_Contig14949:64..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BACFR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis GN=ispG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            RR+T  V +G V +G  +PIR+Q+MT   T+D    V +  RI D G + VR+T QG +EA+    I   L    Y +PLVAD+HF+P VA   A   +K+R+NPGN+ D
Sbjct:    8 RRETSEVNIGAVPLGGPNPIRIQSMTNTPTQDTEACVAQAKRIVDAGGEYVRLTTQGVKEAENLMNINIGLRSTGYMVPLVADVHFSPKVADVAAQYAEKVRINPGNYVD 117          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_PSEAE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas aeruginosa GN=ispG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  304 SIHKT---VRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            SIH     +RRK++ + VGNV +G + PI VQ+MT  +T DVA TV ++ R+ D GAD+VR++V     A+A  +IK     +  N+PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    2 SIHSASPIIRRKSRKIWVGNVPVGGDAPIAVQSMTNTETCDVAATVAQIRRLEDAGADIVRVSVPDMDAAEAFGKIK-----QQVNVPLVADIHFDYRIALRVAELGVDCLRINPGN 113          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_PSEAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  304 SIHKT---VRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            SIH     +RRK++ + VGNV +G + PI VQ+MT  +T DVA TV ++ R+ D GAD+VR++V     A+A  +IK     +  N+PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    2 SIHSASPIIRRKSRKIWVGNVPVGGDAPIAVQSMTNTETCDVAATVAQIRRLEDAGADIVRVSVPDMDAAEAFGKIK-----QQVNVPLVADIHFDYRIALRVAELGVDCLRINPGN 113          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_PSEA8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  304 SIHKT---VRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            SIH     +RRK++ + VGNV +G + PI VQ+MT  +T DVA TV ++ R+ D GAD+VR++V     A+A  +IK     +  N+PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    2 SIHSASPIIRRKSRKIWVGNVPVGGDAPIAVQSMTNTETCDVAATVAQIRRLEDAGADIVRVSVPDMDAAEAFGKIK-----QQVNVPLVADIHFDYRIALRVAELGVDCLRINPGN 113          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BACFN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ispG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            RR+T  V +G V +G  +PIR+Q+MT   T+D    V +  RI D G + VR+T QG +EA+    I   L    Y +PLVAD+HF P VA   A   +K+R+NPGN+ D
Sbjct:    8 RRETSEVNIGAVPLGGPNPIRIQSMTNTPTQDTEACVAQAKRIVDAGGEYVRLTTQGVKEAENLMNINIGLRSTGYMVPLVADVHFNPKVADVAAQYAEKVRINPGNYVD 117          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_PORGI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Porphyromonas gingivalis GN=ispG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.302e-20
Identity = 49/110 (44.55%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            RRKT    +G+  +G + PIR+Q+M    T D   +V++  RI D GAD VR T QG REA     I   L +  Y+IPLVADIHF+P  A       +K+R+NPGNF +
Sbjct:    9 RRKTSVAQIGDTPLGGDFPIRIQSMANVSTMDTQASVDQAARIIDAGADYVRFTAQGVREAVNLQHIHAGLCRLGYHIPLVADIHFSPKAAEEALLHVEKVRINPGNFVE 118          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_PARD8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ispG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.302e-20
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            RRK+    +G+  +G E+PIR+Q+M    T D    V + +R+ + GA+ VR T QG+REA    EI+  L ++ Y  PLVADIHF P  A   A   +K+R+NPGN+ D
Sbjct:    8 RRKSSVAQIGDTPMGGENPIRIQSMANVSTMDTEAAVAQAIRMIEAGAEYVRFTAQGEREARNLGEIRKQLNEQGYTTPLVADIHFNPRAADAAAGEVEKVRINPGNYVD 117          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_PSEA7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=ispG PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  304 SIHKT---VRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            SIH      RRK++ + VGNV +G + PI VQ+MT  +T DVA TV ++ R+ D GAD+VR++V     A+A  +IK     +  N+PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    2 SIHSASPITRRKSRKIWVGNVPVGGDAPIAVQSMTNTETCDVAATVAQIRRLEDAGADIVRVSVPDMDAAEAFGKIK-----QQVNVPLVADIHFDYRIALRVAELGVDCLRINPGN 113          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_SYNPX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain WH8102) GN=ispG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.128e-20
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  289 QKYCESIHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNF 645
            ++Y   IH   RR T+TVMVG+VAIGS+HP+ VQ+M   DT D+   V  ++R+A+ G+++VR+T      A A  EI+  +  +   +PLVAD+H     +A+ VA   DK+R+NPG F
Sbjct:    6 RRYDTQIH---RRITRTVMVGDVAIGSDHPVVVQSMINEDTLDIDAAVAGIVRLAEAGSEIVRVTTPSMAHARAMGEIRAAVRARGCTVPLVADVHHNGVKIAMEVAQHVDKVRINPGLF 122          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_SYNJA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ispG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.128e-20
Identity = 52/121 (42.98%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  286 RQKYCESIHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNF 645
            +Q Y E ++   RR T+TV VGNV IGS+HP+ VQ+M   DT D+   V  + R+ + G+++VR+TV     A A   I++ L+Q    +PLVAD+H     +AL VA   DK+R+NPG F
Sbjct:   12 QQPYPEPVYP--RRPTRTVAVGNVLIGSQHPVVVQSMINEDTLDIDAAVAAIRRLHEAGSEIVRVTVPSMAHAKAMEAIRSKLIQTYKPVPLVADVHHNGIKIALEVAQYVDKVRINPGLF 130          
The following BLAST results are available for this feature:
BLAST of FC873100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_BACFR7.911e-2143.644-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEAE1.762e-2047.014-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEAB1.762e-2047.014-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEA81.762e-2047.014-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFN1.762e-2043.644-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PORGI2.302e-2044.554-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PARD82.302e-2042.734-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEA73.926e-2047.014-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNPX5.128e-2042.504-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNJA5.128e-2042.984-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873100 ID=FC873100; Name=FC873100; organism=Citrus clementina; type=EST; length=652bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGAGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TA
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