FC873100

Overview
NameFC873100
Unique NameFC873100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_YERP3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 44/112 (39.29%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  319 VRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGNFAD 651
            +RRK+  + VG V IG   PI VQ+MT   T DV  TV ++  +   G D+VR+++     A+A       L+++   +PLVADIHF   +AL+VA+   D +R+NPGN  +
Sbjct:    8 IRRKSTRIYVGKVPIGDGAPIAVQSMTNTKTTDVDATVAQIKALERVGVDIVRVSIPTMDAAEAF-----KLIKQQSTVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGN 114          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_RENSM (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RRKT+ + VG+V +GS+ PI +Q+MTT  T D+  T++++  +   G D+VR+      +A+A       ++ K   IP++ADIHF P       +     +RVNPGN
Sbjct:   19 RRKTRQIKVGSVGVGSDSPISLQSMTTTPTTDINATLQQIAELTASGCDIVRVACPSADDAEAL-----PIIAKKSQIPVIADIHFQPKYVFAAIEAGCAAVRVNPGN 121          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_NEIMF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADC---FDKIRVNPGN 642
            RRKT  V + ++ +GSE P+ +Q+MT  DT D   T  ++  ++D G+++VRITV     A    EI+  L    Y  PL+ D HF    +     +C     K R+NPGN
Sbjct:    6 RRKTHQVRIDHITVGSEAPVVIQSMTNTDTADAKATALQIKELSDAGSEMVRITVNSPEAASKVAEIRRRLDDMGYATPLIGDFHFNGERLLAEFPECGKALSKYRINPGN 116          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_NEIMB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Neisseria meningitidis serogroup B GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADC---FDKIRVNPGN 642
            RRKT  V + ++ +GSE P+ +Q+MT  DT D   T  ++  ++D G+++VRITV     A    EI+  L    Y  PL+ D HF    +     +C     K R+NPGN
Sbjct:    6 RRKTHQVRIDHITVGSEAPVVIQSMTNTDTADAKATALQIKELSDAGSEMVRITVNSPEAASKVAEIRRRLDDMGYATPLIGDFHFNGERLLAEFPECGKALSKYRINPGN 116          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_NEIMA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Neisseria meningitidis serogroup A GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADC---FDKIRVNPGN 642
            RRKT  V + ++ +GSE P+ +Q+MT  DT D   T  ++  ++D G+++VRITV     A    EI+  L    Y  PL+ D HF    +     +C     K R+NPGN
Sbjct:    6 RRKTHQVRIDHITVGSEAPVVIQSMTNTDTADAKATALQIKELSDAGSEMVRITVNSPEAASKVAEIRRRLDDMGYATPLIGDFHFNGERLLAEFPECGKALSKYRINPGN 116          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_NEIM0 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Neisseria meningitidis serogroup C (strain 053442) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADC---FDKIRVNPGN 642
            RRKT  V + ++ +GSE P+ +Q+MT  DT D   T  ++  ++D G+++VRITV     A    EI+  L    Y  PL+ D HF    +     +C     K R+NPGN
Sbjct:    6 RRKTHQVRIDHITVGSEAPVVIQSMTNTDTADAKATALQIKELSDAGSEMVRITVNSPEAASKVAEIRRRLDDMGYATPLIGDFHFNGERLLAEFPECGKALSKYRINPGN 116          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CAMJR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Campylobacter jejuni (strain RM1221) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGN 642
            R KT+ + VGNV IG + PI VQ+M    T+D+ G++E++ R+   GA++VR+      +A A  EIK         +PL+ DIHF  ++A+  A+  D +R+NPGN
Sbjct:    5 RFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQINRLYFAGANIVRLACLDMADARALKEIK-----AKSPLPLIVDIHFNHNLAVYCAEFIDGVRINPGN 106          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CAMJJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGN 642
            R KT+ + VGNV IG + PI VQ+M    T+D+ G++E++ R+   GA++VR+      +A A  EIK         +PL+ DIHF  ++A+  A+  D +R+NPGN
Sbjct:    5 RFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQINRLYFAGANIVRLACLDMADARALKEIK-----AKSPLPLIVDIHFNHNLAVYCAEFIDGVRINPGN 106          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CAMJE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Campylobacter jejuni GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGN 642
            R KT+ + VGNV IG + PI VQ+M    T+D+ G++E++ R+   GA++VR+      +A A  EIK         +PL+ DIHF  ++A+  A+  D +R+NPGN
Sbjct:    5 RFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQINRLYFAGANIVRLACLDMADARALKEIK-----AKSPLPLIVDIHFNHNLAVYCAEFIDGVRINPGN 106          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CAMJD (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGN 642
            R KT+ + VGNV IG + PI VQ+M    T+D+ G++E++ R+   GA++VR+      +A A  EIK         +PL+ DIHF  ++A+  A+  D +R+NPGN
Sbjct:    5 RFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQINRLYFAGANIVRLACLDMADARALKEIK-----AKSPLPLIVDIHFNHNLAVYCAEFIDGVRINPGN 106          
The following BLAST results are available for this feature:
BLAST of FC873100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_YERP31.445e-1439.294-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RENSM1.445e-1436.114-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NEIMF1.445e-1436.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NEIMB1.445e-1436.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NEIMA1.445e-1436.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NEIM01.445e-1436.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CAMJR1.445e-1439.254-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CAMJJ1.445e-1439.254-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CAMJE1.445e-1439.254-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CAMJD1.445e-1439.254-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873100 ID=FC873100; Name=FC873100; organism=Citrus clementina; type=EST; length=652bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGAGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TA
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