FC873100

Overview
NameFC873100
Unique NameFC873100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ARTS2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Arthrobacter sp. (strain FB24) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RRKT+ + VG+V +GS+ PI VQ+MTT  T D+  T++++  +   G D+VR+      +A+A       ++ +   IP++ADIHF P       +     +RVNPGN
Sbjct:   19 RRKTRQIKVGSVGVGSDSPISVQSMTTTPTTDINATLQQIAELTASGCDIVRVACPSADDAEAL-----PIIARKSQIPVIADIHFQPKYVFAAIEAGCAAVRVNPGN 121          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ARTCA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RRKT+ + VG+V +GS+ PI VQ+MTT  T D+  T++++  +   G D+VR+      +A+A       ++ +   IP++ADIHF P       +     +RVNPGN
Sbjct:   19 RRKTRQIKVGSVGVGSDSPISVQSMTTTPTTDINATLQQIAELTASGCDIVRVACPSADDAEAL-----PIIARKSQIPVIADIHFQPKYVFAAIEAGCAAVRVNPGN 121          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ARTAT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Arthrobacter aurescens (strain TC1) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RRKT+ + VG+V +GS+ PI VQ+MTT  T D+  T++++  +   G D+VR+      +A+A       ++ +   IP++ADIHF P       +     +RVNPGN
Sbjct:   19 RRKTRQIKVGSVGVGSDSPISVQSMTTTPTTDINATLQQIAELTASGCDIVRVACPSADDAEAL-----PIIARKSQIPVIADIHFQPKYVFAAIEAGCAAVRVNPGN 121          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_THESQ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermotoga sp. (strain RQ2) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  334 QTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVA-LRVADCFDKIRVNPGNFA 648
            ++V VGNV IG   P+ VQ+MTT  T DV  T+ ++ R+   G +++R+ VQ + +A A   IK  +      IPLVADI F   +A L + +  DKIR+NPGN +
Sbjct:    3 KSVKVGNVVIGGGAPVSVQSMTTTKTADVERTISQIKRLERAGCEIIRVAVQDEEDAKAIRRIKEQI-----EIPLVADIQFDYRLAILSIDNGADKIRINPGNMS 103          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_THEP1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  334 QTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVA-LRVADCFDKIRVNPGNFA 648
            ++V VGNV IG   P+ VQ+MTT  T DV  T+ ++ R+   G +++R+ VQ + +A A   IK  +      IPLVADI F   +A L + +  DKIR+NPGN +
Sbjct:    3 KSVKVGNVVIGGGAPVSVQSMTTTKTADVERTISQIKRLERAGCEIIRVAVQDEEDAKAIRRIKEQI-----EIPLVADIQFDYRLAILSIDNGADKIRINPGNMS 103          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_GLOVI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Gloeobacter violaceus GN=ispG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  319 VRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNF 645
            +RR T+ V VG + IG   P+ VQ+M   DT D  G V  +  +   G +LVR+TV     A A   I+ TL      +PLVAD+H     +AL VA   DK+R+NPG F
Sbjct:   14 LRRVTRPVQVGALTIGGNAPVVVQSMINEDTLDTPGAVAAIRALHKAGCELVRVTVPSLAHARALERIRKTLEDTYRPVPLVADVHHDGGPIALEVARHVDKVRINPGLF 123          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_DEIRA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Deinococcus radiodurans GN=ispG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR----VADCFDKIRVNPGN 642
            RR+T +V VG V +GS HPI VQ+MT  DT +   T  +V ++A  G+++VR+TV  +  A A  E+   L     ++P+V D H+   + LR     A    K R+NPGN
Sbjct:   25 RRQTVSVNVGGVMVGSAHPIVVQSMTNTDTANAEATAIQVAQLARAGSEIVRVTVNTREAAAAVPELVQRLADIGVHVPIVGDFHYNGHLLLREYPETARLLAKYRINPGN 135          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CAMFF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGN 642
            R  T+ ++VGNV IG + PI VQ+MT   T+DV   +E++ R+   G D+VR  V  K +     ++K     K   +P+VADIHF  S A+ V+   D IR+NPGN
Sbjct:    3 RYPTKQILVGNVKIGGDAPISVQSMTFAKTRDVKECLEQINRLYFAGCDIVRCAVFNKEDIVGLEQVK-----KESPLPIVADIHFNYSYAVAVSKFVDAIRINPGN 104          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BAUCH (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=ispG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGNFAD 651
            RRK++ + VGNV IG   PI VQ+MT   T +V  TV ++  +   GAD+VR++V     A+     +  L+++  ++PLVADIHF   +AL+VA    + +R+NPGN  +
Sbjct:    8 RRKSKRIYVGNVPIGDGAPIAVQSMTNTQTTNVIATVNQIKALERLGADIVRVSVPTLHAAE-----QFKLIKEQVDVPLVADIHFDYRIALKVAKYGVNCLRINPGNIGN 113          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ZYMMO (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Zymomonas mobilis GN=ispG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.465e-14
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDK-IRVNPGN 642
            RRK++ +MVGNVA+G + PI VQTMT   T D   T+ ++ R    G DL+R++   K    A  +I          +P++ADIHF    AL  AD     +R+NPGN
Sbjct:   11 RRKSRKIMVGNVAVGGDAPISVQTMTNTPTVDAQATIAQIKRCEAVGVDLIRVSCPDKESTAALKDIVRAA-----EVPIIADIHFHYKRALEAADAGAACLRINPGN 113          
The following BLAST results are available for this feature:
BLAST of FC873100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_ARTS21.445e-1436.114-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ARTCA1.445e-1436.114-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ARTAT1.445e-1436.114-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THESQ1.887e-1441.514-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THEP11.887e-1441.514-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GLOVI1.887e-1440.914-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_DEIRA1.887e-1438.744-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CAMFF1.887e-1441.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BAUCH1.887e-1439.644-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ZYMMO2.465e-1439.814-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873100 ID=FC873100; Name=FC873100; organism=Citrus clementina; type=EST; length=652bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGAGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TA
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