FC873100

Overview
NameFC873100
Unique NameFC873100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BRUSI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=ispG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  310 HKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVADCFDKIRVNPGN 642
            H   RR++  V VG V +G   P+ VQ+MT  DT DV  TV +V+ +   G+++VRITV     A A  +I+  L +  +++PLV D H+     L      A+   K R+NPGN
Sbjct:   11 HPFPRRQSVGVSVGGVIVGGSAPVVVQSMTNTDTADVDSTVAQVVALHRAGSEIVRITVDRDESAAAVPKIRERLERLGHDVPLVGDFHYIGHKLLADHPACAEALAKYRINPGN 125          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BRUAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Brucella abortus GN=ispG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  310 HKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVADCFDKIRVNPGN 642
            H   RR++  V VG V +G   P+ VQ+MT  DT DV  TV +V  +   G+++VRITV     A A  +I+  L +  +++PLV D H+     L      A+   K R+NPGN
Sbjct:   11 HPFPRRQSVGVSVGGVIVGGSAPVVVQSMTNTDTADVDSTVAQVAALHRAGSEIVRITVDRDESAAAVPKIRERLERLGHDVPLVGDFHYIGHKLLADHPACAEALSKYRINPGN 125          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BRUA2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Brucella abortus (strain 2308) GN=ispG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  310 HKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVADCFDKIRVNPGN 642
            H   RR++  V VG V +G   P+ VQ+MT  DT DV  TV +V  +   G+++VRITV     A A  +I+  L +  +++PLV D H+     L      A+   K R+NPGN
Sbjct:   11 HPFPRRQSVGVSVGGVIVGGSAPVVVQSMTNTDTADVDSTVAQVAALHRAGSEIVRITVDRDESAAAVPKIRERLERLGHDVPLVGDFHYIGHKLLADHPACAEALSKYRINPGN 125          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BRUA1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Brucella abortus (strain S19) GN=ispG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  310 HKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVADCFDKIRVNPGN 642
            H   RR++  V VG V +G   P+ VQ+MT  DT DV  TV +V  +   G+++VRITV     A A  +I+  L +  +++PLV D H+     L      A+   K R+NPGN
Sbjct:   11 HPFPRRQSVGVSVGGVIVGGSAPVVVQSMTNTDTADVDSTVAQVAALHRAGSEIVRITVDRDESAAAVPKIRERLERLGHDVPLVGDFHYIGHKLLADHPACAEALSKYRINPGN 125          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CAMLR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=ispG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGN 642
            R KT+ + VG+V IG + PI VQ+M    T+DV G +E++ R+   GA++VR+      +A A  EIK         +PL+ DIHF   +A+  A+  D +R+NPGN
Sbjct:    5 RYKTRQIKVGDVLIGGDAPISVQSMLFTKTRDVEGCLEQLNRLYFAGANIVRLACLDMADARALKEIK-----AKSPLPLIVDIHFNHKLAVFCAEFIDGVRINPGN 106          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG2_STRCO (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2 OS=Streptomyces coelicolor GN=ispG2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RRK++ + VG VA+G + P+ VQ+MTT  T D+  T++++  +   G  +VR+    + +ADA       ++ +   IP++ADIHF P       +     +RVNPGN
Sbjct:   18 RRKSRQIQVGPVAVGGDAPVSVQSMTTTRTSDIGATLQQIAELTASGCQIVRVACPTQDDADAL-----PVIARKSQIPVIADIHFQPKYVFAAIEAGCAAVRVNPGN 120          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_XYLFT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ispG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVADCFDKIRVNPGN 642
            RR TQ V +G++ +G  HP+ VQ+MT  DT DV  + ++V  +   G+++VR+TV   + A A   I   L      +PL+ D H+     L      A+   K R+NPGN
Sbjct:   15 RRLTQAVNIGHLTVGGGHPVVVQSMTNTDTADVVASTKQVAELWRAGSEMVRLTVNNAQSAAAIPRIAERLAMMGIEVPLIGDFHYNGHQLLADEPACAEVLAKYRINPGN 125          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_STRMK (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Stenotrophomonas maltophilia (strain K279a) GN=ispG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRV----ADCFDKIRVNPGN 642
            RR+T  V +G V +G   P+ VQ+MT  DT DVA +V++V  +   G+++VR+TV     A A   I + L     ++PL+ D H+     L      A+   K R+NPGN
Sbjct:   19 RRQTHAVQIGGVTVGGGKPVVVQSMTNTDTSDVASSVKQVAELWRAGSEMVRLTVNTVEAAAAIPRIVDKLAMMGIDVPLIGDFHYNGHQLLTAEPACAEALAKYRINPGN 129          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_STRM5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Stenotrophomonas maltophilia (strain R551-3) GN=ispG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRV----ADCFDKIRVNPGN 642
            RR+T  V +G V +G   P+ VQ+MT  DT DVA +V++V  +   G+++VR+TV     A A   I + L     ++PL+ D H+     L      A+   K R+NPGN
Sbjct:   19 RRQTHAVQIGGVTVGGGKPVVVQSMTNTDTSDVASSVKQVAELWRAGSEMVRLTVNTVEAAAAIPRIVDKLAMMGIDVPLIGDFHYNGHQLLTAEPACAEALAKYRINPGN 129          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_OLICO (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=ispG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVADCFDKIRVNPGN 642
            R +T  V VGNV +G   PI VQ+MT  DT D+  TV++V  +A  G+++VRITV  +  A A   I+  L +   ++PL+ D H+     L      A    K R+NPGN
Sbjct:   24 RHQTVQVTVGNVKVGGGAPIVVQSMTNTDTADIDSTVKQVAALARAGSEMVRITVDREEAAAAVPHIREKLDKLGVDVPLIGDFHYIGHKLLSEYPACAAALAKYRINPGN 134          
The following BLAST results are available for this feature:
BLAST of FC873100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_BRUSI1.223e-1337.394-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BRUAB1.223e-1337.394-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BRUA21.223e-1337.394-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BRUA11.223e-1337.394-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CAMLR1.598e-1339.254-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG2_STRCO1.598e-1334.264-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_XYLFT2.087e-1335.144-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_STRMK2.087e-1336.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_STRM52.087e-1336.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_OLICO2.087e-1338.744-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873100 ID=FC873100; Name=FC873100; organism=Citrus clementina; type=EST; length=652bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGAGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TA
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