FC873100

Overview
NameFC873100
Unique NameFC873100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14949 contig Ccv1_Contig14949:64..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_SACD2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.324e-19
Identity = 52/108 (48.15%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RRK++ +MVG+VA+G + PI +Q+MT  +T DV  TV ++ RI   GAD+VR++V     A+A   I+     K  +IPLVADIHF   +ALRVAD   D +R+NPGN
Sbjct:    9 RRKSRQIMVGDVAVGGDAPITIQSMTNTETTDVEATVAQIERIQMAGADIVRVSVPSMDAAEAFGAIR-----KRVSIPLVADIHFDYRIALRVADLGVDCLRINPGN 111          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ALCBS (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ispG PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.669e-19
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  313 KTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAD-CFDKIRVNPGN 642
            K  RRKT+ VMVGNV +G + PI VQ+MT ++T DV  TV ++ R+ D G D+VR++V     A+A  +I+     K  ++PLVADIH+   +AL VA+   D +R+NPGN
Sbjct:    6 KIERRKTRQVMVGNVPVGGDAPISVQSMTNSETCDVDATVGQIRRLQDAGVDIVRVSVPSMEAAEAFGKIR-----KQVDVPLVADIHYDYKIALAVAEQGVDCLRINPGN 111          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_THETN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermoanaerobacter tengcongensis GN=ispG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  319 VRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VADCFDKIRVNPGN 642
            +R+ T+ + +GN  IG  +PI VQ+MT  DT DV  TVE++ R+ ++G D++R+ V  ++ A +  EIK     K+ NIPLVADIHF   +A++ + +  DKIR+NPGN
Sbjct:    4 MRKLTREIKIGNKKIGGNNPILVQSMTNTDTHDVEKTVEQIKRLEEEGCDIIRVAVPDEKAAYSIKEIK-----KHINIPLVADIHFDYRLAIKSIENGADKIRINPGN 107          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BACCR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ispG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  316 TVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VADCFDKIRVNPGN 642
            T R KT+ V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+ V  +R ADA  +IK     K  NIPLVADIHF   +AL+ +    DK+R+NPGN
Sbjct:    5 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDERAADAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGN 109          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BACC4 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus cereus (strain B4264) GN=ispG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  316 TVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VADCFDKIRVNPGN 642
            T R KT+ V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+ V  +R ADA  +IK     K  NIPLVADIHF   +AL+ +    DK+R+NPGN
Sbjct:    5 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDERAADAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGN 109          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BACC2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus cereus (strain G9842) GN=ispG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  316 TVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VADCFDKIRVNPGN 642
            T R KT+ V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+ V  +R ADA  +IK     K  NIPLVADIHF   +AL+ +    DK+R+NPGN
Sbjct:    5 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDERAADAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGN 109          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_SYNJB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. GN=ispG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.650e-18
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  286 RQKYCESIHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPGNF 645
            +Q Y E ++   RR T+TV V +V IGS+HP+ VQ+M   DT DV   V  + R+ + G+++VR+TV     A A   I+  L+Q    +PLVAD+H     +AL VA   DK+R+NPG F
Sbjct:   12 QQPYPEPVYP--RRPTRTVAVADVLIGSQHPVVVQSMINEDTLDVDAAVAGIRRLHEAGSEIVRVTVPSMAHAKAMEAIREKLIQTYKPVPLVADVHHNGIKIALEVAKYVDKVRINPGLF 130          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPG 639
            RRKT+ V VGNV IGS++P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A +  +IK  L +    +P+VAD+H     +AL VA   DK+R+NPG
Sbjct:   21 RRKTRAVKVGNVTIGSDYPVVVQSMINEDTLDIEGSVAAIRRLHEIGCEIVRVTVPSMAHARSLAQIKAKLAETYQAVPIVADVHHNGMKIALEVAKHVDKVRINPG 127          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_RUTMC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=ispG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 52/108 (48.15%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RRK++ V VG+VAIG + PI VQ+MT  +T DV  TV ++  I + GADLVR++V     A+A F+I    ++K  NIPL++DIHF   +AL+VA+   D +R+NPGN
Sbjct:    9 RRKSKQVFVGDVAIGGDAPISVQSMTNTETTDVKATVAQIQAIQNAGADLVRVSVPTIDAAEA-FKI----IKKQVNIPLISDIHFDYKIALKVAEYGADCLRINPGN 111          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_COLP3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=ispG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  319 VRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGNFAD 651
            +RR ++ +MVGNV +G + PI VQ+MT   T DVA TV ++  +   GAD+VR++V     A+A  EIK     K  N+PLVADIHF   +AL+VA+   D +R+NPGN  +
Sbjct:    8 IRRVSRQIMVGNVPVGGDAPITVQSMTNTLTTDVAATVAQIKALEAVGADIVRVSVPTMDAAEAFREIK-----KQVNVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGN 114          
The following BLAST results are available for this feature:
BLAST of FC873100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_SACD23.324e-1948.154-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ALCBS5.669e-1945.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THETN1.263e-1844.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACCR1.263e-1846.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACC41.263e-1846.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACC21.263e-1846.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNJB1.650e-1842.154-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP22.154e-1842.994-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RUTMC2.154e-1848.154-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_COLP32.154e-1845.544-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873100 ID=FC873100; Name=FC873100; organism=Citrus clementina; type=EST; length=652bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGAGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TA
back to top