FC873100

Overview
NameFC873100
Unique NameFC873100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14949 contig Ccv1_Contig14949:64..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_BEII9 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  349 GNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVADCFDKIRVNPGN 642
            G+V +G   PI VQ+MT  DT D+  TVE+V  +A  G++LVRITV     A A   I+  L +    +PLV D H+     L      A+   K R+NPGN
Sbjct:   37 GSVQVGGGAPIVVQSMTNTDTADIDSTVEQVAALARAGSELVRITVDRDPAAAAVPYIREKLDKMGCLVPLVGDFHYIGHRLLTEYPACAEALAKYRINPGN 138          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_SALTO (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 35/108 (32.41%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RR ++ +MVG+V +G   P+ VQ+MTT  T DV  T++++  +   G  +VR+ V  + +  A        + +   +P++ADIHF P       +     +RVNPGN
Sbjct:   19 RRASRQIMVGSVPVGGGAPVSVQSMTTTLTADVNATLQQIAELTAAGCQIVRVAVPSQDDVAAL-----PAIARKSQLPVIADIHFQPRYVFAAIEAGCAAVRVNPGN 121          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_LARHH (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 42/111 (37.84%), Postives = 55/111 (49.55%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VADC---FDKIRVNPGN 642
            RR  +   +G+V +G   P+ VQ+MT  DT D A T  +V  +   G+++VRITV     A    EI+  L       PLV D HF     LR   DC     K R+NPGN
Sbjct:    8 RRVCRQARIGHVLMGGTAPVVVQSMTNTDTADAAATALQVFDLWQAGSEVVRITVNSPEAAARVAEIRLRLDDMGCTAPLVGDFHFNGDRLLRDYPDCARALAKYRINPGN 118          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_RALPJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Ralstonia pickettii (strain 12J) GN=ispG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 38/100 (38.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  355 VAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR----VADCFDKIRVNPGN 642
            V +G + P+ VQ+MT  DT D  GT  +V  +A  G++LVRITV     A A   I+  L +   ++PLV D H+     L+     A    K R+NPGN
Sbjct:   34 VHVGGDAPVCVQSMTNTDTSDAIGTAIQVKELARAGSELVRITVDTPAAAAAVPAIREQLDRMGVDVPLVGDFHYNGHKLLQDYPECAQALSKYRINPGN 133          
The following BLAST results are available for this feature:
BLAST of FC873100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_BEII94.351e-1140.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SALTO5.682e-1132.414-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LARHH5.682e-1137.844-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RALPJ7.422e-1138.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873100 ID=FC873100; Name=FC873100; organism=Citrus clementina; type=EST; length=652bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGAGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TA
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