FC873100

Overview
NameFC873100
Unique NameFC873100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14949 contig Ccv1_Contig14949:64..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ANASP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=ispG PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.799e-18
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPG 639
            RRKT+ V VGNV IG  +P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  EIK  L++   ++P+VAD+H     +AL VA   +K+R+NPG
Sbjct:   25 RRKTRPVKVGNVTIGGGYPVVVQSMINEDTLDIDGSVAAIRRLHEIGCEIVRVTVPSIAHAVALAEIKQKLIKTYQDVPIVADVHHNGMKIALEVAKHIEKVRINPG 131          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_THEEB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispG PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  319 VRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPG 639
            VRRKT+ V +G+V IG  HP+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  EI++ L +    +PLVAD+H     +AL VA   D +R+NPG
Sbjct:   18 VRRKTRPVPIGSVVIGGGHPVAVQSMINEDTLDIEGSVAAIRRLHEIGCEIVRVTVPSLAHAKAMEEIRDRLYKTYKPVPLVADVHHNGMKIALEVAKYVDNVRINPG 125          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_RHOPB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVADCFDKIRVNPGN 642
            R KT  VMVG+VA+G   PI VQ+MT  DT DVAGTVE+V  +   G++LVRITV  +  A A   I++ L ++    PL+ D H+     L      A+  DK R+NPGN
Sbjct:   18 RHKTTQVMVGDVAVGGGAPIVVQSMTNTDTADVAGTVEQVAALTRAGSELVRITVDREEAAAAVPHIRDALRKRGITTPLIGDFHYIGHKLLADYPACAEALDKYRINPGN 128          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_NOSP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPG 639
            RRKT+ V VGNV IG  +P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  EIK  L++   ++P+VAD+H     +AL V+   +K+R+NPG
Sbjct:   25 RRKTRPVKVGNVTIGGGYPVVVQSMINEDTLDIDGSVAGIRRLHEIGCEIVRVTVPSMAHAKALAEIKQKLIKTYQDVPIVADVHHNGLKIALEVSKHIEKVRINPG 131          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_MARMS (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Marinomonas sp. (strain MWYL1) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGNFAD 651
            RR ++ +MVGNV +G   PI VQ+MT  +T DV  TV ++  IAD GAD+VR+++     A+A  +I+  +     +IPLVADIHF   +AL+VA+   D +R+NPGN  +
Sbjct:    9 RRHSRQIMVGNVPVGGGAPISVQSMTNTETCDVDATVAQIRAIADAGADIVRVSIPSMDAAEAFKKIREAV-----SIPLVADIHFDYKIALKVAEYGVDCLRINPGNIGN 114          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPG 639
            RRKT+ V VG++ IG  +P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  EIK  L++    +PLVAD+H     +AL VA   DK+R+NPG
Sbjct:   23 RRKTRGVKVGDITIGGGYPVVVQSMINEDTLDIDGSVAAIRRLHEIGCEIVRVTVPSMAHAKALAEIKEKLIKTYKAVPLVADVHHNGMKIALEVAKHVDKVRINPG 129          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CYAA5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  268 SPLLIPRQKYCESIHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPG 639
            +P    + ++  +IH   RRKT+ V VG++ IG   P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A   IK  L Q    +PLVAD+H     +AL VA   DK+R+NPG
Sbjct:    6 TPQTTSKPEFDTTIH---RRKTRPVKVGDITIGGGFPVVVQSMINEDTLDIEGSVSAIRRLHEMGCEIVRVTVPSMAHAKALATIKEKLAQVYQPVPLVADVHHNGLKIALEVAKHVDKVRINPG 127          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ANOFW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 1
Query:  301 ESIHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VADCFDKIRVNPGN 642
            E IH   R KT+ V VGN+ IG  + + +Q+MTT  T DV  TV ++ R+ + G  +VR+    +R ADA  EIK     K  NIPLV DIHF   +AL+ + +  DKIR+NPGN
Sbjct:    3 EIIH---RSKTRPVRVGNITIGGNNEVVIQSMTTTKTHDVDATVAQIHRLEEAGCQIVRVACPDERAADAIAEIK-----KRINIPLVVDIHFDYRLALKAIENGADKIRINPGN 109          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ANAVT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPG 639
            RRKT+ V VGNV IG  +P+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A  EIK  L+    ++P+VAD+H     +AL VA   +K+R+NPG
Sbjct:   25 RRKTRPVKVGNVTIGGGYPVVVQSMINEDTLDIDGSVAAIRRLHEIGCEIVRVTVPSIAHAVALAEIKQKLITTYQDVPIVADVHHNGMKIALEVAKHIEKVRINPG 131          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ACAM1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPG 639
            RRKT+ V VG+V IG  HP+ VQ+M   DT D+ G+V  + R+ + G ++VR+TV     A A   IK  L      +PLVAD+H     +AL VA   DK+R+NPG
Sbjct:   24 RRKTRPVPVGDVIIGGGHPVVVQSMINEDTLDIEGSVAAIRRLHELGCEIVRVTVPSMAHAKALATIKEKLTATYQTVPLVADVHHNGMKIALEVAKHVDKVRINPG 130          
The following BLAST results are available for this feature:
BLAST of FC873100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_ANASP4.799e-1842.994-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THEEB6.268e-1842.594-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RHOPB6.268e-1845.054-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NOSP76.268e-1842.064-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MARMS6.268e-1844.144-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP78.186e-1842.994-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAA58.186e-1839.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANOFW8.186e-1845.224-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANAVT8.186e-1842.994-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ACAM18.186e-1843.934-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873100 ID=FC873100; Name=FC873100; organism=Citrus clementina; type=EST; length=652bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGAGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TA
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