FC873100

Overview
NameFC873100
Unique NameFC873100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14949 contig Ccv1_Contig14949:64..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_PSEHT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ispG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RRK+  + VGNV IG   PI VQ+MT  DT DV  TV ++  I D GAD+VR++V     A+A   IK     +   IPLVADIHF   +AL+VA    D +R+NPGN
Sbjct:    9 RRKSTRINVGNVPIGDGAPIAVQSMTNTDTMDVGATVAQIQAIQDAGADIVRVSVPTMDAAEAFKSIK-----EQVTIPLVADIHFDYRIALKVAKYGVDCLRINPGN 111          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_PSE14 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ispG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RR+++ + VG+V +G + PI VQ+MT +DT DVA TV ++ R+   G D+VR++V     A+A   IK  +      +PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    9 RRESRKIWVGSVPVGGDAPIAVQSMTNSDTNDVAATVAQINRLEAAGVDIVRVSVPDMDAAEAFGRIKQLV-----KVPLVADIHFDYRIALRVAELGVDCLRINPGN 111          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_NOCFA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nocardia farcinica GN=ispG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGNFAD 651
            RRKT+ +MVG+V +GS+HP+ VQ+MTT  T DV  T++++ ++   G D+VR+    + +ADA        + K   IP++ADIHF P       D     +RVNPGN  +
Sbjct:   20 RRKTRQLMVGSVGVGSDHPVSVQSMTTTKTHDVNATLQQIAQLTASGCDIVRVACPRQEDADAL-----ATIAKKSQIPVIADIHFQPRYIFAAIDAGCAAVRVNPGNIKE 125          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_METCA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Methylococcus capsulatus GN=ispG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVADCFDKIRVNPGN 642
            R++T  V VG+V IG   PI VQ+MT  DT DVAGTV +V+ +A  G++LVRITV  +  A+A   I+  L ++  N+PLV D HF     L      A+   K R+NPGN
Sbjct:    4 RKQTVGVRVGSVRIGGGAPIVVQSMTNTDTADVAGTVRQVIDLARAGSELVRITVNNEEAAEAVPRIREELDRQGCNVPLVGDFHFNGHKLLDKYPACAEALGKFRINPGN 114          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_GEOSW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Geobacillus sp. (strain WCH70) GN=ispG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 1
Query:  301 ESIHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALR-VADCFDKIRVNPGN 642
            E IH   R KT+ V VGN+ IG  + + +Q+MTT  T DV  TV ++ R+ + G  +VR+    +R A+A  EIK     K  NIPLVADIHF   +AL+ +    DKIR+NPGN
Sbjct:    3 EIIH---RSKTRPVRVGNLTIGGNNEVIIQSMTTTKTHDVEATVAQIKRLEEAGCQIVRVACPDERAANAIPEIK-----KRINIPLVADIHFDYKLALKAIEGGADKIRINPGN 109          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CORU7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ispG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGNFAD 651
            RRKT+ +MVG+V +GSEHPI VQ+MTT  T D+  T++++ ++   G D+VR+     R+A+A       ++ K   IP++ADIHF P    +  +     +RVNPGN  +
Sbjct:   19 RRKTRQLMVGDVGVGSEHPISVQSMTTTKTHDINATLQQIAQLTASGCDIVRVACPKPRDAEAL-----PIIAKKSPIPVIADIHFQPRYIFQAIEAGCAAVRVNPGNIKE 124          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CHRSD (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=ispG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADC-FDKIRVNPGN 642
            RRK++ + VG+V +G + PI VQ+MT  DT DV  TV ++ ++   GAD+VR++V     A+A  +IK     +  ++PLVADIHF   +ALRVA+   D +R+NPGN
Sbjct:    9 RRKSRQIHVGHVPVGGDAPIAVQSMTNTDTLDVDATVAQIRQLEAAGADIVRVSVPTMDAAEAFGQIK-----RQVSVPLVADIHFDYKIALRVAELGVDCLRINPGN 111          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ACIF5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=ispG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRV-ADCFDKIRVNPGN 642
            RRKT+ + VG VAIG + PI VQ+MT  +T+D+A TV ++ R+   GAD+VRI+V     A+A        ++     PLVADIHF   +AL+V  D  D +R+NPGN
Sbjct:    9 RRKTRQIHVGKVAIGGDAPISVQSMTNTETRDIAATVAQIRRLEAVGADIVRISVPSMDAAEAF-----KTIRAQVETPLVADIHFDHRIALQVMEDGVDGLRINPGN 111          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_ACIF2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=ispG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRV-ADCFDKIRVNPGN 642
            RRKT+ + VG VAIG + PI VQ+MT  +T+D+A TV ++ R+   GAD+VRI+V     A+A        ++     PLVADIHF   +AL+V  D  D +R+NPGN
Sbjct:    9 RRKTRQIHVGKVAIGGDAPISVQSMTNTETRDIAATVAQIRRLEAVGADIVRISVPSMDAAEAF-----KTIRAQVETPLVADIHFDHRIALQVMEDGVDGLRINPGN 111          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_TRIEI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=ispG PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.111e-17
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  247 LQPASERSPLLIPRQKYCESIHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHF-APSVALRVADCFDKIRVNPG 639
            +Q  +  S   I +  +  +IH   RRKT++V VG++ IG  HP+ VQ+M   DT D+  +V  + R+ + G ++VR+TV     A +  EIK  L +    +PLVAD+H     +AL VA   DK+R+NPG
Sbjct:    1 MQTLANPSKTPINQAVFDTTIH---RRKTRSVKVGDITIGGGHPVVVQSMINEDTLDIERSVAAIRRLHEIGCEIVRVTVPSIAHAKSLGEIKQKLAETYKPVPLVADVHHNGMKIALEVAKQVDKVRINPG 129          
The following BLAST results are available for this feature:
BLAST of FC873100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_PSEHT1.824e-1748.154-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSE141.824e-1744.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NOCFA2.382e-1739.644-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_METCA2.382e-1745.054-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GEOSW2.382e-1745.224-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CORU72.382e-1739.644-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHRSD2.382e-1744.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ACIF52.382e-1745.374-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ACIF22.382e-1745.374-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_TRIEI3.111e-1737.884-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873100 ID=FC873100; Name=FC873100; organism=Citrus clementina; type=EST; length=652bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGAGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TA
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