FC873101

Overview
NameFC873101
Unique NameFC873101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1996 contig Ccv1_Contig1996:188..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: MSK3_MEDSA (Glycogen synthase kinase-3 homolog MsK-3 OS=Medicago sativa GN=MSK-3 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHARK 329
            TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEA+DLVSRLLQYSP+LR TALEA  HPF+DD+RDPNT LPNGR LP LFNF   EL G   E+  +L+P HARK
Sbjct:  295 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFYDDVRDPNTRLPNGRFLPPLFNFKVNELKGVPAEMLVKLVPPHARK 403          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: KSG3_ARATH (Shaggy-related protein kinase gamma OS=Arabidopsis thaliana GN=ASK3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 85/109 (77.98%), Postives = 93/109 (85.32%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHARK 329
            TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEA+DLVSRLLQYSP+LRC AL++  HPFFD+LRDPN  LPNGR LP LFNF   EL G   E+  +L+PEHARK
Sbjct:  294 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCAALDSLVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGVPVEMVAKLVPEHARK 402          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: KSG2_ARATH (Shaggy-related protein kinase beta OS=Arabidopsis thaliana GN=ASK2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.849e-46
Identity = 87/108 (80.56%), Postives = 94/108 (87.04%), Query Frame = 3
Query:    6 REEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHARK 329
            REEIK MNP Y +FKFPQIKA PWHKIF +++ PEA+DL SRLLQYSP+LRCTALEACAHPFFDDLRDP   LPNGR LP LF+FTAQELAGAS ELR RLIPEHARK
Sbjct:  324 REEIKNMNPRYNDFKFPQIKAQPWHKIFRRQVSPEAMDLASRLLQYSPNLRCTALEACAHPFFDDLRDPRASLPNGRALPPLFDFTAQELAGASVELRHRLIPEHARK 431          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: KSG1_ARATH (Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=2 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 4.114e-45
Identity = 84/109 (77.06%), Postives = 91/109 (83.49%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHARK 329
            TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEA+DLVSRLLQYSP+LR  AL+   HPFFD+LRDPN  LPNGR LP LFNF   EL G   E+  +L+PEHARK
Sbjct:  290 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSAALDTLVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGVPLEMVAKLVPEHARK 398          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: MSK1_MEDSA (Glycogen synthase kinase-3 homolog MsK-1 OS=Medicago sativa GN=MSK-1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.042e-44
Identity = 83/109 (76.15%), Postives = 89/109 (81.65%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHARK 329
            TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMP EA+DLVSRLLQYSP+LRC AL+   HPFFD+LRDPN  LP GR LP LFNF   EL G   E   +L+PEHARK
Sbjct:  296 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPAEAVDLVSRLLQYSPNLRCQALDCLTHPFFDELRDPNARLPTGRFLPPLFNFKPHELKGVPVETLMKLVPEHARK 404          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3B_SPECI (Glycogen synthase kinase-3 beta OS=Spermophilus citellus GN=GSK3B PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.559e-36
Identity = 73/108 (67.59%), Postives = 84/108 (77.78%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHAR 326
            TRE+I+ MNPNYTEFKFPQIKAHPW K+F  R PPEA+ L SRLL+Y+P+ R T LEACAH FFD+LRDPN  LPNGR  P LFNFT QEL+ ++  L   LIP HAR
Sbjct:  277 TREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELS-SNPPLATILIPPHAR 383          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3B_RAT (Glycogen synthase kinase-3 beta OS=Rattus norvegicus GN=Gsk3b PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.559e-36
Identity = 73/108 (67.59%), Postives = 84/108 (77.78%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHAR 326
            TRE+I+ MNPNYTEFKFPQIKAHPW K+F  R PPEA+ L SRLL+Y+P+ R T LEACAH FFD+LRDPN  LPNGR  P LFNFT QEL+ ++  L   LIP HAR
Sbjct:  277 TREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELS-SNPPLATILIPPHAR 383          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3B_MOUSE (Glycogen synthase kinase-3 beta OS=Mus musculus GN=Gsk3b PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.559e-36
Identity = 73/108 (67.59%), Postives = 84/108 (77.78%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHAR 326
            TRE+I+ MNPNYTEFKFPQIKAHPW K+F  R PPEA+ L SRLL+Y+P+ R T LEACAH FFD+LRDPN  LPNGR  P LFNFT QEL+ ++  L   LIP HAR
Sbjct:  277 TREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELS-SNPPLATILIPPHAR 383          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3B_HUMAN (Glycogen synthase kinase-3 beta OS=Homo sapiens GN=GSK3B PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.559e-36
Identity = 73/108 (67.59%), Postives = 84/108 (77.78%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHAR 326
            TRE+I+ MNPNYTEFKFPQIKAHPW K+F  R PPEA+ L SRLL+Y+P+ R T LEACAH FFD+LRDPN  LPNGR  P LFNFT QEL+ ++  L   LIP HAR
Sbjct:  277 TREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELS-SNPPLATILIPPHAR 383          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3A_HUMAN (Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32
Identity = 69/108 (63.89%), Postives = 79/108 (73.15%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHAR 326
            TRE+I+ MNPNYTEFKFPQIKAHPW K+F  R PPEA+ L S LL+Y+PS R + LEACAH FFD+LR   T LPN RPLP LFNF+A EL+     L   LIP H R
Sbjct:  340 TREQIREMNPNYTEFKFPQIKAHPWTKVFKSRTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRCLGTQLPNNRPLPPLFNFSAGELS-IQPSLNAILIPPHLR 446          
The following BLAST results are available for this feature:
BLAST of FC873101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
MSK3_MEDSA2.181e-4678.90Glycogen synthase kinase-3 homolog MsK-3 OS=Medica... [more]
KSG3_ARATH2.181e-4677.98Shaggy-related protein kinase gamma OS=Arabidopsis... [more]
KSG2_ARATH2.849e-4680.56Shaggy-related protein kinase beta OS=Arabidopsis ... [more]
KSG1_ARATH4.114e-4577.06Shaggy-related protein kinase alpha OS=Arabidopsis... [more]
MSK1_MEDSA2.042e-4476.15Glycogen synthase kinase-3 homolog MsK-1 OS=Medica... [more]
GSK3B_SPECI4.559e-3667.59Glycogen synthase kinase-3 beta OS=Spermophilus ci... [more]
GSK3B_RAT4.559e-3667.59Glycogen synthase kinase-3 beta OS=Rattus norvegic... [more]
GSK3B_MOUSE4.559e-3667.59Glycogen synthase kinase-3 beta OS=Mus musculus GN... [more]
GSK3B_HUMAN4.559e-3667.59Glycogen synthase kinase-3 beta OS=Homo sapiens GN... [more]
GSK3A_HUMAN5.216e-3263.89Glycogen synthase kinase-3 alpha OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873101 ID=FC873101; Name=FC873101; organism=Citrus clementina; type=EST; length=711bp
CAACAAGAGAAGAAATTAAGTGCATGAATCCAAATTACACAGAATTTAAG
TTCCCTCAAATTAAAGCTCATCCATGGCATAAGATATTTCACAAACGAAT
GCCCCCTGAAGCACTGGATCTTGTCTCAAGGTTGCTTCAGTATTCACCAA
GCCTACGATGCACTGCTTTGGAGGCATGTGCACACCCCTTCTTTGATGAT
TTGAGAGACCCCAATACTTGTTTGCCAAATGGGCGACCCCTACCTACTCT
TTTCAATTTCACTGCTCAAGAATTGGCTGGTGCCTCTAATGAATTGCGAC
AACGTCTTATCCCGGAGCACGCAAGGAAATGATTTGATGACTGAGATGGA
TCCATATGCAATATAAATCAATTTTTGGATGCTTAGGTATGCCACAAGCC
ATTGTGCCCTACAGGGCAACCGATTTTTTTCCCTTCACCAATGAGTTGGT
TCGTGGCTGGGAGGCTGCTCAAGGATTTTTATGATGAATCTGCTGATGGG
AGTGAGTTGTGGATGGAAGAAGGTTTGACATTTATTTTCTAATTAGCAAT
GTTTAATTTGTTTTATGTCTCAATTATGAAAGCTTGAGTTATTCCAGATA
TGTCTGTCATATATTGTTTACATTATTCGTTGTGGAAAACTAACTTGACA
TTATCAAGTTGATGAATTAGGATGGCGTTCTTGGTGTATAAAAAAAAAAA
AAAAAAAAAAA
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