FC873101

Overview
NameFC873101
Unique NameFC873101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1996 contig Ccv1_Contig1996:188..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3A_RAT (Glycogen synthase kinase-3 alpha OS=Rattus norvegicus GN=Gsk3a PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 68/108 (62.96%), Postives = 78/108 (72.22%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHAR 326
            TRE+I+ MNPNYTEFKFPQIKAHPW K+F  R PPEA+ L S LL+Y+PS R + LEACAH FFD+LR   T LPN RPLP LFNF+  EL+     L   LIP H R
Sbjct:  340 TREQIREMNPNYTEFKFPQIKAHPWTKVFKSRTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRSLGTQLPNNRPLPPLFNFSPGELS-IQPSLNAILIPPHLR 446          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: SGG_DROME (Protein kinase shaggy OS=Drosophila melanogaster GN=sgg PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLR-DPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEH 320
            TRE+I+ MNPNYTEFKFPQIK+HPW K+F  R P EA++LVS LL+Y+PS R T L+ACAHPFFD+LR + N  LPNGR +P LFNFT  EL+     L  +L+P+H
Sbjct:  828 TREQIREMNPNYTEFKFPQIKSHPWQKVFRIRTPTEAINLVSLLLEYTPSARITPLKACAHPFFDELRMEGNHTLPNGRDMPPLFNFTEHELS-IQPSLVPQLLPKH 933          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFH-KRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHA 323
            T+E+I  MNP YT FKFP+IKA+PW ++F  K +P E++DL+S++L Y PS R   +E CAHPFFD+LRDP TCLP+G+PLP LFNFT  E      +L + LIP HA
Sbjct:  275 TKEQIHAMNPYYTSFKFPEIKANPWPRVFKAKDVPAESIDLISKILLYDPSSRLKPVEICAHPFFDELRDPKTCLPDGKPLPPLFNFTIAEQTSIGPKLAKTLIPSHA 382          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3A_MOUSE (Glycogen synthase kinase-3 alpha OS=Mus musculus GN=Gsk3a PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 66/109 (60.55%), Postives = 77/109 (70.64%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHK-RMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHAR 326
            TRE+I+ MNPNYTEFKFPQIKAHPW K+F   + PPEA+ L S LL+Y+PS R + LEACAH FFD+LR     LPN RPLP LFNF+  EL+     L   LIP H R
Sbjct:  340 TREQIREMNPNYTEFKFPQIKAHPWTKVFKSSKTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRRLGAQLPNDRPLPPLFNFSPGELS-IQPSLNAILIPPHLR 447          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3_CAEEL (Glycogen synthase kinase-3 OS=Caenorhabditis elegans GN=gsk-3 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTL 251
            TRE+I+ MNPNY EFKFPQIKAHPW+K+F    P EA+DL+S++++Y+P+ R T   AC H FFD+LR+P+  LP+GRPLPTL
Sbjct:  257 TREQIQSMNPNYKEFKFPQIKAHPWNKVFRVHTPAEAIDLISKIIEYTPTSRPTPQAACQHAFFDELRNPDARLPSGRPLPTL 339          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3_SCHPO (Protein kinase gsk3 OS=Schizosaccharomyces pombe GN=gsk3 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNG-------RPLPTLFNFTAQELAGASNELRQRLIPEHAR 326
            +RE+IK MNPNY E +FPQI+  P  ++F + +P +ALDL+S++LQY+P+ R TA EA  HPFFD+LRDPNT L N        R LP LFNF+  EL+    +L Q+LIP HAR
Sbjct:  253 SREQIKTMNPNYMEHRFPQIRPQPLSRVFSRSVPLDALDLLSKMLQYTPTDRLTAAEAMCHPFFDELRDPNTKLHNSRNPDASPRHLPELFNFSPFELS-IRPDLNQKLIPSHAR 366          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3H_DROME (Putative glycogen synthase kinase-3 homolog OS=Drosophila melanogaster GN=gskt PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLR-DPNTCLPNGRPLPTLFNFTAQE 272
            T E++  MNP+Y +FK P++K HPW K+F  R P EA+DLVS++L YSP+ R + L  CAHPFFD+LR DP+  LPNGR LP LFNFT  E
Sbjct:  254 TSEQLHDMNPHYKQFKLPELKPHPWSKVFRIRTPAEAIDLVSKMLIYSPNARVSPLMGCAHPFFDELRQDPHQQLPNGRSLPPLFNFTDYE 344          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK3_CAEBR (Glycogen synthase kinase-3 OS=Caenorhabditis briggsae GN=gsk-3 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.066e-25
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 3
Query:    3 TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTL 251
            TRE+I+ MNPNY EFKFPQIKAHPW+K+F    P EA+DL+S++++Y+P+ R T   AC H FFD+LR P+  LP+GR LP L
Sbjct:  257 TREQIQSMNPNYKEFKFPQIKAHPWNKVFRVHTPAEAIDLISKIIEYTPTSRPTPQAACQHAFFDELRSPDARLPSGRALPQL 339          
BLAST of FC873101 vs. ExPASy Swiss-Prot
Match: GSK31_SCHPO (Protein kinase gsk31 OS=Schizosaccharomyces pombe GN=gsk31 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 3
Query:   12 EIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPN--------GRPLPTLFNFTAQELAGASNELRQRLIPEHARK*FD 338
            EI  MNPNY     P ++ H    +        A+DL+ ++L Y PS R +A+E   HPFFD+LRDPN C+ +         R LP LFNF   EL+   N L + ++P H  +  D
Sbjct:  249 EISVMNPNYVNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPSKRISAIEVLTHPFFDELRDPN-CMYHCSRDEGTIERHLPPLFNFNLAELSIRPN-LNKAILPPHVYESLD 363          
The following BLAST results are available for this feature:
BLAST of FC873101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GSK3A_RAT8.897e-3262.96Glycogen synthase kinase-3 alpha OS=Rattus norvegi... [more]
SGG_DROME2.589e-3161.68Protein kinase shaggy OS=Drosophila melanogaster G... [more]
GSK3_DICDI2.589e-3156.48Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
GSK3A_MOUSE4.133e-2960.55Glycogen synthase kinase-3 alpha OS=Mus musculus G... [more]
GSK3_CAEEL1.470e-2661.45Glycogen synthase kinase-3 OS=Caenorhabditis elega... [more]
GSK3_SCHPO3.275e-2653.04Protein kinase gsk3 OS=Schizosaccharomyces pombe G... [more]
GSK3H_DROME3.621e-2558.24Putative glycogen synthase kinase-3 homolog OS=Dro... [more]
GSK3_CAEBR8.066e-2559.04Glycogen synthase kinase-3 OS=Caenorhabditis brigg... [more]
GSK31_SCHPO1.291e-1437.61Protein kinase gsk31 OS=Schizosaccharomyces pombe ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873101 ID=FC873101; Name=FC873101; organism=Citrus clementina; type=EST; length=711bp
CAACAAGAGAAGAAATTAAGTGCATGAATCCAAATTACACAGAATTTAAG
TTCCCTCAAATTAAAGCTCATCCATGGCATAAGATATTTCACAAACGAAT
GCCCCCTGAAGCACTGGATCTTGTCTCAAGGTTGCTTCAGTATTCACCAA
GCCTACGATGCACTGCTTTGGAGGCATGTGCACACCCCTTCTTTGATGAT
TTGAGAGACCCCAATACTTGTTTGCCAAATGGGCGACCCCTACCTACTCT
TTTCAATTTCACTGCTCAAGAATTGGCTGGTGCCTCTAATGAATTGCGAC
AACGTCTTATCCCGGAGCACGCAAGGAAATGATTTGATGACTGAGATGGA
TCCATATGCAATATAAATCAATTTTTGGATGCTTAGGTATGCCACAAGCC
ATTGTGCCCTACAGGGCAACCGATTTTTTTCCCTTCACCAATGAGTTGGT
TCGTGGCTGGGAGGCTGCTCAAGGATTTTTATGATGAATCTGCTGATGGG
AGTGAGTTGTGGATGGAAGAAGGTTTGACATTTATTTTCTAATTAGCAAT
GTTTAATTTGTTTTATGTCTCAATTATGAAAGCTTGAGTTATTCCAGATA
TGTCTGTCATATATTGTTTACATTATTCGTTGTGGAAAACTAACTTGACA
TTATCAAGTTGATGAATTAGGATGGCGTTCTTGGTGTATAAAAAAAAAAA
AAAAAAAAAAA
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